FFCP PHASE1:Hg19::chr19:3572689..3572697,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10362 | |EntrezGene=10362 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |HGNC=5002 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8X5 | |UniProt=C9J8X5 | ||
|association_with_transcript=-77bp_to_ENST00000416526_5end | |association_with_transcript=-77bp_to_ENST00000416526_5end | ||
|cluster_id=chr19:3572689..3572697,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_22_at_HMG20B_5end | |description=CAGE_peak_22_at_HMG20B_5end | ||
|id=chr19:3572689..3572697,+ | |id=chr19:3572689..3572697,+ | ||
|ontology_enrichment_celltype=CL:0000148!1.21e-26!10;CL:0000541!1.21e-26!10;CL:0000147!1.27e-18!14;CL:0000990!4.42e-16!8;CL:0000453!4.52e-14!5;CL:0002567!5.91e-14!3;CL:0002150!4.15e-13!3;CL:0000861!4.15e-13!3;CL:0000451!4.91e-13!10;CL:0000710!1.33e-12!20;CL:0000235!5.72e-10!10;CL:0000075!5.74e-09!27;CL:0000325!2.71e-07!39;CL:0002077!4.37e-07!33 | |ontology_enrichment_celltype=CL:0000148!1.21e-26!10;CL:0000541!1.21e-26!10;CL:0000147!1.27e-18!14;CL:0000990!4.42e-16!8;CL:0000453!4.52e-14!5;CL:0002567!5.91e-14!3;CL:0002150!4.15e-13!3;CL:0000861!4.15e-13!3;CL:0000451!4.91e-13!10;CL:0000710!1.33e-12!20;CL:0000235!5.72e-10!10;CL:0000075!5.74e-09!27;CL:0000325!2.71e-07!39;CL:0002077!4.37e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000148;4.65e-101;10!CL:0002567;3.51e-85;3!CL:0000147;2.20e-72;14!CL:0000710;7.44e-51;20!CL:0000075;8.21e-38;27!CL:0002566;3.64e-29;1!CL:0002077;1.74e-25;34!CL:0001014;2.55e-15;2!CL:0001016;2.55e-15;2!CL:0000453;6.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,4.26e-101,10;CL:0000541,4.26e-101,10;CL:0002567,3.04e-85,3;CL:0000147,2.07e-72,14;CL:0000710,7.12e-51,20;CL:0000075,7.95e-38,27;CL:0002077,3.87e-30,34;CL:0002566,3.16e-29,1;CL:0000333,6.39e-24,41;CL:0000133,5.71e-17,59;CL:0001014,2.74e-15,2;CL:0001016,2.74e-15,2;CL:0000221,4.85e-14,72;CL:0000453,6.77e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000133;1.88e-10;59!CL:0000221;8.48e-08;72 | |||
|ontology_enrichment_disease=DOID:1909!2.14e-09!2;DOID:0050687!3.86e-07!143;DOID:305!8.44e-07!106 | |ontology_enrichment_disease=DOID:1909!2.14e-09!2;DOID:0050687!3.86e-07!143;DOID:305!8.44e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!6.82e-21!9;UBERON:0001557!4.50e-12!19 | |ontology_enrichment_uberon=UBERON:0001737!6.82e-21!9;UBERON:0001557!4.50e-12!19 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p22@HMG20B | |short_description=p22@HMG20B | ||
}} | }} |
Latest revision as of 10:46, 17 September 2015
Short description: | p22@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -77bp_to_ENST00000416526_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | C9J8X5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 4.26e-101 | 10 |
melanoblast | 4.26e-101 | 10 |
light melanocyte | 3.04e-85 | 3 |
pigment cell | 2.07e-72 | 14 |
neurecto-epithelial cell | 7.12e-51 | 20 |
columnar/cuboidal epithelial cell | 7.95e-38 | 27 |
ecto-epithelial cell | 3.87e-30 | 34 |
dark melanocyte | 3.16e-29 | 1 |
migratory neural crest cell | 6.39e-24 | 41 |
neurectodermal cell | 5.71e-17 | 59 |
CD1a-positive Langerhans cell | 2.74e-15 | 2 |
immature CD1a-positive Langerhans cell | 2.74e-15 | 2 |
ectodermal cell | 4.85e-14 | 72 |
Langerhans cell | 6.77e-07 | 5 |