FFCP PHASE1:Hg19::chr13:44454031..44454051,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:44454031..44454051,+ to FFCP PHASE1:Hg19::chr13:44454031..44454051,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=144811 | |EntrezGene=144811 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26789 | |HGNC=26789 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV20,Q7Z395 | |UniProt=Q8IV20,Q7Z395 | ||
|association_with_transcript=62bp_to_ENST00000325686,NM_153218,uc001uzf.3_5end | |||
|cluster_id=chr13:44454031..44454051,+ | |||
|description=CAGE_peak_2_at_LACC1_5end | |||
|id=chr13:44454031..44454051,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.13e-12!42;CL:0000557!2.46e-12!71;CL:0002009!6.98e-12!65;CL:0002194!2.65e-11!63;CL:0000576!2.65e-11!63;CL:0000040!2.65e-11!63;CL:0000559!2.65e-11!63;CL:0000839!5.79e-11!70;CL:0000860!3.84e-10!45;CL:0000766!5.01e-10!76 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.17e-18;39!CL:0000234;1.17e-18;39!CL:0000860;6.95e-18;33!CL:0002057;6.95e-18;33!CL:0000576;1.98e-09;48!CL:0000359;6.12e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.76e-17,48;CL:0000234,3.76e-17,48;CL:0002009,2.65e-15,61;CL:0000557,4.26e-15,67;CL:0002194,1.45e-14,59;CL:0000576,1.45e-14,59;CL:0000040,1.45e-14,59;CL:0000559,1.45e-14,59;CL:0000839,2.61e-13,66;CL:0000860,5.45e-13,42;CL:0002057,5.45e-13,42;CL:0000766,9.88e-12,72;CL:0000723,2.88e-08,433;CL:0000359,3.88e-08,32;CL:0000048,7.83e-08,427;CL:0000034,1.64e-07,441;CL:0000192,6.70e-07,43;CL:0000514,6.70e-07,43;CL:0000680,8.43e-07,58;CL:0000056,8.43e-07,58;CL:0000355,8.43e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002057;3.62e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.74e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.62e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!3.39e-14!167;UBERON:0000467!4.32e-13!625;UBERON:0000480!5.32e-13!626;UBERON:0000468!1.08e-12!659;UBERON:0000062!2.47e-11!511;UBERON:0000923!8.74e-11!604;UBERON:0005291!8.74e-11!604;UBERON:0006598!8.74e-11!604;UBERON:0002532!8.74e-11!604;UBERON:0002050!8.99e-11!605;UBERON:0005423!8.99e-11!605;UBERON:0002371!1.89e-10!80;UBERON:0000922!2.03e-10!612;UBERON:0004765!9.48e-10!101;UBERON:0001434!9.48e-10!101;UBERON:0001474!2.53e-09!86;UBERON:0000926!5.74e-07!448;UBERON:0004120!5.74e-07!448;UBERON:0006603!5.74e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.30e-17,167;UBERON:0002050,7.77e-16,564;UBERON:0000923,6.20e-15,560;UBERON:0010316,6.20e-15,560;UBERON:0005291,6.20e-15,560;UBERON:0006598,6.20e-15,560;UBERON:0010317,6.20e-15,560;UBERON:0002532,6.20e-15,560;UBERON:0005423,1.08e-13,581;UBERON:0002371,1.39e-13,76;UBERON:0000926,9.38e-13,315;UBERON:0004120,9.38e-13,315;UBERON:0006603,9.38e-13,315;UBERON:0000922,5.21e-12,592;UBERON:0001474,1.28e-11,82;UBERON:0004765,5.97e-11,90;UBERON:0001434,7.81e-11,100;UBERON:0003081,3.30e-10,203;UBERON:0002405,2.42e-09,93;UBERON:0002390,5.79e-08,98;UBERON:0003061,5.79e-08,98;UBERON:0000479,7.68e-08,773;UBERON:0001637,7.25e-07,42;UBERON:0003509,7.25e-07,42;UBERON:0004572,7.25e-07,42;UBERON:0001049,9.26e-07,56;UBERON:0005068,9.26e-07,56;UBERON:0006241,9.26e-07,56;UBERON:0007135,9.26e-07,56 | |||
|phase1_expression=2.72517568905835,1.92690471501885,13.9544860055011,0,4.02264984984559,2.61701557230111,0,0.631719873426831,0.783556884599516,0,0,0.218441372130172,0,0.37129905888014,0,106.899698285832,101.855375236052,88.3675209368722,98.0744925568919,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0.786728553697808,1.15148819429164,0.464448369948228,1.83884244895785,0,1.10926203050036,2.09161441566814,4.54941543959749,0,1.66198622559563,0.601633342410425,0.217010870715852,96.5075693974074,38.5433462562586,134.71202187268,13.37663796772,17.0044174659964,27.8971670365989,20.4537552477002,27.9594163854842,26.944454267874,30.2077011938258,38.9364273924233,66.9244710584696,4.82643953031266,5.80936215225443,4.06279459783025,16.7535682192918,19.6492428041649,55.0572536890457,13.1616073719488,22.4650318953266,25.5734850319616,35.2940891199786,38.8954132362182,63.9337125799041,17.1223450790865,16.4541715160431,48.5801354216549,17.8386552332288,25.5526630025899,42.786202406908,6.05399502633369,12.5214396235772,34.1779378436155,0.422510572623884,0.637812899895131,0,0.561643155732475,0.150176892841506,0.16072558669708,0.570025487482497,0.39783335439818,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,1.32171328579026,0,0,0.196709770113833,0,0.205601498999509,0.167186495390678,0,0,0,0.445641827540694,0.589211814949674,0,0,0,0.130059347559878,0.986627427622057,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0,0,0,7.67175371061182,0.722878304769133,0.50133791063589,0.289693037921647,2.3858578411533,1.94653948121054,0.189069634328136,0.221729397462564,0.351339142772504,1.57174890597255,0.364295288292542,0,0.324547393654683,0.870648686496336,2.39324328933957,0.238490624305342,0,0,0.39752481473341,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.35576626268671,0,3.22263453687318,1.52054421143703,0.488124115096339,1.10298924103761,0,0.17859945656816,0,0.225222960966644,0,0,0.183201743930407,1.31780417436063,0,0.872188104285069,40.2547280873208,3.41902381494365,49.7858519857703,4.87622255272983,7.09336764396714,11.7742296029885,0,0.24666754841716,2.8008993185979,1.21239604862719,0.326923806226917,0,0,0,0.312160076830321,1.1409436430889,0.298897361103602,0.23486899728753,0.161872944368132,0.280901613404497,0.816616685019573,0.61417158655884,0.309977343527296,3.56400857184616,1.48360157567134,0,0,1.17835279767846,0.375355559615893,0,0.877955241761676,0,2.10333282469236,1.70148274740032,0.358779271377724,0.427114777637135,3.17897851739343,1.20036438433761,2.16410311400722,1.54584324027377,1.11670113798954,1.0126579934476,1.07180705677318,0.252433774244115,1.84099797284599,4.68773564774555,0.355009592516614,0.10075209822764,0.169560592310488,3.67195621010264,3.54569956768085,2.86804595389004,0.243947412259191,0.397589304964456,0.116193942869518,0.829288440122964,0.756962552626885,0,7.8224766164908,4.5026865673502,1.38134921352481,2.3218396401599,1.44375896333917,0,0.168584690078102,0.482022059766964,0.441175890929576,0,0.474541238222193,0.539325232640658,0,0,0,0,0,1.47008711385542,2.53510069643662,0.982827216677626,1.18157981336281,0,1.47586126251736,0.514703430895577,1.97550513735526,3.37205259772859,4.02115889646523,1.48141512253647,0.325808305310325,1.03993478527958,0,0,0.939269553886573,0.721832238805369,0.925971025153221,0.951270761172991,1.58040879591855,0,91.100292252337,9.82817913584798,54.8448988845407,7.49870671894216,3.86358894857377,4.11147782002921,7.70203295244495,3.19697332365358,0.766765358330422,7.38994856843915,1.67292024625129,0.621984346622316,1.29707958075265,0.50496973370552,0.126995788584338,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0,0,0.66004457238855,1.55126058909333,0,0,1.59562869950922,1.04007436911366,0.257207374262142,0,0,1.28680194292333,0,0,0,0.710783897485092,0.791951872933429,37.0770433783291,36.6044052612123,29.3920594075248,26.7572317410619,143.645528149588,86.441915188043,0.479249710983165,0,0,2.46128221334885,0,2.50685348535854,0,0,0.215627574859517,0,1.77866236955724,0,0,0.837581326671744,0.637938751653163,0,0,0.828831026872071,0.49076596687656,0,0,0.831883446123229,0.713715955188647,4.57337003598411,2.81139395982512,0.902838299183157,0,0,0,0.553107505625109,1.56390506042549,0,0,0.620304078368662,0.215714200818617,0.213455115606889,0.303127571446259,1.66435439510497,0.604780586659361,16.8713309316768,10.8958001034524,12.9103643439214,65.2228269711518,2.04682899626681,14.6377068240683,1.48418066444991,0.462629081407967,4.79416658345443,2.29956036838666,3.11552657510173,2.32420756919918,0.846016147141356,2.20557117333613,1.65745780084613,1.14814448164607,2.1850940160806,0.786746489756545,0.451199612907412,0.693138033939733,0,0,0.73886140225013,0,0,0,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0.438519753291869,0,0,0,0,0.9273691048295,0.27470839445503,0.82509499920588,0.574265537996172,1.30012049207304,12.8547143875328,3.86682873168488,1.23238893691716,1.38153307253517,0.827019434907183,6.230374202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| |phase1_expression=2.72517568905835,1.92690471501885,13.9544860055011,0,4.02264984984559,2.61701557230111,0,0.631719873426831,0.783556884599516,0,0,0.218441372130172,0,0.37129905888014,0,106.899698285832,101.855375236052,88.3675209368722,98.0744925568919,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0.786728553697808,1.15148819429164,0.464448369948228,1.83884244895785,0,1.10926203050036,2.09161441566814,4.54941543959749,0,1.66198622559563,0.601633342410425,0.217010870715852,96.5075693974074,38.5433462562586,134.71202187268,13.37663796772,17.0044174659964,27.8971670365989,20.4537552477002,27.9594163854842,26.944454267874,30.2077011938258,38.9364273924233,66.9244710584696,4.82643953031266,5.80936215225443,4.06279459783025,16.7535682192918,19.6492428041649,55.0572536890457,13.1616073719488,22.4650318953266,25.5734850319616,35.2940891199786,38.8954132362182,63.9337125799041,17.1223450790865,16.4541715160431,48.5801354216549,17.8386552332288,25.5526630025899,42.786202406908,6.05399502633369,12.5214396235772,34.1779378436155,0.422510572623884,0.637812899895131,0,0.561643155732475,0.150176892841506,0.16072558669708,0.570025487482497,0.39783335439818,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,1.32171328579026,0,0,0.196709770113833,0,0.205601498999509,0.167186495390678,0,0,0,0.445641827540694,0.589211814949674,0,0,0,0.130059347559878,0.986627427622057,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0,0,0,7.67175371061182,0.722878304769133,0.50133791063589,0.289693037921647,2.3858578411533,1.94653948121054,0.189069634328136,0.221729397462564,0.351339142772504,1.57174890597255,0.364295288292542,0,0.324547393654683,0.870648686496336,2.39324328933957,0.238490624305342,0,0,0.39752481473341,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.35576626268671,0,3.22263453687318,1.52054421143703,0.488124115096339,1.10298924103761,0,0.17859945656816,0,0.225222960966644,0,0,0.183201743930407,1.31780417436063,0,0.872188104285069,40.2547280873208,3.41902381494365,49.7858519857703,4.87622255272983,7.09336764396714,11.7742296029885,0,0.24666754841716,2.8008993185979,1.21239604862719,0.326923806226917,0,0,0,0.312160076830321,1.1409436430889,0.298897361103602,0.23486899728753,0.161872944368132,0.280901613404497,0.816616685019573,0.61417158655884,0.309977343527296,3.56400857184616,1.48360157567134,0,0,1.17835279767846,0.375355559615893,0,0.877955241761676,0,2.10333282469236,1.70148274740032,0.358779271377724,0.427114777637135,3.17897851739343,1.20036438433761,2.16410311400722,1.54584324027377,1.11670113798954,1.0126579934476,1.07180705677318,0.252433774244115,1.84099797284599,4.68773564774555,0.355009592516614,0.10075209822764,0.169560592310488,3.67195621010264,3.54569956768085,2.86804595389004,0.243947412259191,0.397589304964456,0.116193942869518,0.829288440122964,0.756962552626885,0,7.8224766164908,4.5026865673502,1.38134921352481,2.3218396401599,1.44375896333917,0,0.168584690078102,0.482022059766964,0.441175890929576,0,0.474541238222193,0.539325232640658,0,0,0,0,0,1.47008711385542,2.53510069643662,0.982827216677626,1.18157981336281,0,1.47586126251736,0.514703430895577,1.97550513735526,3.37205259772859,4.02115889646523,1.48141512253647,0.325808305310325,1.03993478527958,0,0,0.939269553886573,0.721832238805369,0.925971025153221,0.951270761172991,1.58040879591855,0,91.100292252337,9.82817913584798,54.8448988845407,7.49870671894216,3.86358894857377,4.11147782002921,7.70203295244495,3.19697332365358,0.766765358330422,7.38994856843915,1.67292024625129,0.621984346622316,1.29707958075265,0.50496973370552,0.126995788584338,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0,0,0.66004457238855,1.55126058909333,0,0,1.59562869950922,1.04007436911366,0.257207374262142,0,0,1.28680194292333,0,0,0,0.710783897485092,0.791951872933429,37.0770433783291,36.6044052612123,29.3920594075248,26.7572317410619,143.645528149588,86.441915188043,0.479249710983165,0,0,2.46128221334885,0,2.50685348535854,0,0,0.215627574859517,0,1.77866236955724,0,0,0.837581326671744,0.637938751653163,0,0,0.828831026872071,0.49076596687656,0,0,0.831883446123229,0.713715955188647,4.57337003598411,2.81139395982512,0.902838299183157,0,0,0,0.553107505625109,1.56390506042549,0,0,0.620304078368662,0.215714200818617,0.213455115606889,0.303127571446259,1.66435439510497,0.604780586659361,16.8713309316768,10.8958001034524,12.9103643439214,65.2228269711518,2.04682899626681,14.6377068240683,1.48418066444991,0.462629081407967,4.79416658345443,2.29956036838666,3.11552657510173,2.32420756919918,0.846016147141356,2.20557117333613,1.65745780084613,1.14814448164607,2.1850940160806,0.786746489756545,0.451199612907412,0.693138033939733,0,0,0.73886140225013,0,0,0,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0.438519753291869,0,0,0,0,0.9273691048295,0.27470839445503,0.82509499920588,0.574265537996172,1.30012049207304,12.8547143875328,3.86682873168488,1.23238893691716,1.38153307253517,0.827019434907183,6.230374202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| ||
|short_description=p2@LACC1 | |||
}} | }} |
Latest revision as of 10:41, 17 September 2015
Short description: | p2@LACC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LACC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 62bp_to_ENST00000325686, NM_153218, uc001uzf.3_5end |
EntrezGene: | LACC1 |
HGNC: | 26789 |
UniProt: | Q8IV20Q7Z395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.76e-17 | 48 |
phagocyte | 3.76e-17 | 48 |
macrophage dendritic cell progenitor | 2.65e-15 | 61 |
granulocyte monocyte progenitor cell | 4.26e-15 | 67 |
monopoietic cell | 1.45e-14 | 59 |
monocyte | 1.45e-14 | 59 |
monoblast | 1.45e-14 | 59 |
promonocyte | 1.45e-14 | 59 |
myeloid lineage restricted progenitor cell | 2.61e-13 | 66 |
classical monocyte | 5.45e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.45e-13 | 42 |
myeloid leukocyte | 9.88e-12 | 72 |
somatic stem cell | 2.88e-08 | 433 |
vascular associated smooth muscle cell | 3.88e-08 | 32 |
multi fate stem cell | 7.83e-08 | 427 |
stem cell | 1.64e-07 | 441 |
smooth muscle cell | 6.70e-07 | 43 |
smooth muscle myoblast | 6.70e-07 | 43 |
muscle precursor cell | 8.43e-07 | 58 |
myoblast | 8.43e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.43e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.30e-17 | 167 |
embryonic structure | 7.77e-16 | 564 |
germ layer | 6.20e-15 | 560 |
germ layer / neural crest | 6.20e-15 | 560 |
embryonic tissue | 6.20e-15 | 560 |
presumptive structure | 6.20e-15 | 560 |
germ layer / neural crest derived structure | 6.20e-15 | 560 |
epiblast (generic) | 6.20e-15 | 560 |
developing anatomical structure | 1.08e-13 | 581 |
bone marrow | 1.39e-13 | 76 |
mesoderm | 9.38e-13 | 315 |
mesoderm-derived structure | 9.38e-13 | 315 |
presumptive mesoderm | 9.38e-13 | 315 |
embryo | 5.21e-12 | 592 |
bone element | 1.28e-11 | 82 |
skeletal element | 5.97e-11 | 90 |
skeletal system | 7.81e-11 | 100 |
lateral plate mesoderm | 3.30e-10 | 203 |
immune system | 2.42e-09 | 93 |
hematopoietic system | 5.79e-08 | 98 |
blood island | 5.79e-08 | 98 |
tissue | 7.68e-08 | 773 |
artery | 7.25e-07 | 42 |
arterial blood vessel | 7.25e-07 | 42 |
arterial system | 7.25e-07 | 42 |
neural tube | 9.26e-07 | 56 |
neural rod | 9.26e-07 | 56 |
future spinal cord | 9.26e-07 | 56 |
neural keel | 9.26e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.62e-08 | 14 |