FFCP PHASE1:Hg19::chr1:28696276..28696299,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65979 | |EntrezGene=65979 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25793 | |HGNC=25793 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000493669_5end | |association_with_transcript=21bp_to_ENST00000493669_5end | ||
|cluster_id=chr1:28696276..28696299,+ | |||
|description=CAGE_peak_3_at_PHACTR4_5end | |description=CAGE_peak_3_at_PHACTR4_5end | ||
|id=chr1:28696276..28696299,+ | |id=chr1:28696276..28696299,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.25e-29!254;CL:0000223!4.47e-07!59 | |ontology_enrichment_celltype=CL:0000066!1.25e-29!254;CL:0000223!4.47e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1000507;9.35e-07;10!CL:1000494;9.35e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.74e-31,253;CL:0000223,6.31e-08,58;CL:1000507,6.89e-07,10;CL:1000494,6.89e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.00e-22!106;DOID:0050687!4.03e-18!143;DOID:162!4.70e-16!235;DOID:14566!1.44e-14!239 | |ontology_enrichment_disease=DOID:305!3.00e-22!106;DOID:0050687!4.03e-18!143;DOID:162!4.70e-16!235;DOID:14566!1.44e-14!239 | ||
|ontology_enrichment_disease_v019=DOID:305;1.46e-07;106!DOID:1749;9.37e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.23e-23,106;DOID:0050687,1.45e-18,143;DOID:162,2.07e-15,235;DOID:14566,5.24e-14,239;DOID:299,8.77e-07,25;DOID:1749,9.57e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.02e-12!169;UBERON:0000925!9.02e-12!169;UBERON:0006595!9.02e-12!169;UBERON:0001048!9.65e-10!168;UBERON:0005177!1.03e-09!107;UBERON:0000466!1.69e-09!126;UBERON:0001007!3.62e-09!155;UBERON:0001555!3.62e-09!155;UBERON:0007026!3.62e-09!155;UBERON:0005911!1.41e-08!82;UBERON:0000464!5.55e-08!104;UBERON:0004921!6.51e-08!129;UBERON:0004185!6.51e-08!129;UBERON:0000077!1.02e-07!130;UBERON:0009569!1.36e-07!113;UBERON:0006554!1.71e-07!44;UBERON:0005172!2.20e-07!55;UBERON:0005173!2.20e-07!55;UBERON:0001008!7.08e-07!45 | |ontology_enrichment_uberon=UBERON:0004119!9.02e-12!169;UBERON:0000925!9.02e-12!169;UBERON:0006595!9.02e-12!169;UBERON:0001048!9.65e-10!168;UBERON:0005177!1.03e-09!107;UBERON:0000466!1.69e-09!126;UBERON:0001007!3.62e-09!155;UBERON:0001555!3.62e-09!155;UBERON:0007026!3.62e-09!155;UBERON:0005911!1.41e-08!82;UBERON:0000464!5.55e-08!104;UBERON:0004921!6.51e-08!129;UBERON:0004185!6.51e-08!129;UBERON:0000077!1.02e-07!130;UBERON:0009569!1.36e-07!113;UBERON:0006554!1.71e-07!44;UBERON:0005172!2.20e-07!55;UBERON:0005173!2.20e-07!55;UBERON:0001008!7.08e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.68e-09;30!UBERON:0001008;5.68e-09;30!UBERON:0004211;9.35e-07;10!UBERON:0009773;9.35e-07;10!UBERON:0001231;9.35e-07;10!UBERON:0004810;9.35e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.13e-11,160;UBERON:0000925,9.13e-11,160;UBERON:0006595,9.13e-11,160;UBERON:0005177,6.52e-10,101;UBERON:0001048,7.65e-09,160;UBERON:0001007,2.64e-08,145;UBERON:0001555,2.64e-08,145;UBERON:0007026,2.64e-08,145;UBERON:0005911,3.30e-08,82;UBERON:0006554,5.65e-08,47;UBERON:0009569,1.55e-07,112;UBERON:0001008,1.62e-07,48;UBERON:0005172,3.04e-07,54;UBERON:0005173,3.04e-07,54;UBERON:0004921,3.86e-07,118;UBERON:0004810,6.89e-07,10 | |||
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| ||
|short_description=p3@PHACTR4 | |short_description=p3@PHACTR4 | ||
}} | }} |
Latest revision as of 10:21, 17 September 2015
Short description: | p3@PHACTR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PHACTR4_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000493669_5end |
EntrezGene: | PHACTR4 |
HGNC: | 25793 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.74e-31 | 253 |
endodermal cell | 6.31e-08 | 58 |
kidney tubule cell | 6.89e-07 | 10 |
nephron tubule epithelial cell | 6.89e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.13e-11 | 160 |
endoderm | 9.13e-11 | 160 |
presumptive endoderm | 9.13e-11 | 160 |
trunk region element | 6.52e-10 | 101 |
primordium | 7.65e-09 | 160 |
digestive system | 2.64e-08 | 145 |
digestive tract | 2.64e-08 | 145 |
primitive gut | 2.64e-08 | 145 |
endo-epithelium | 3.30e-08 | 82 |
urinary system structure | 5.65e-08 | 47 |
subdivision of trunk | 1.55e-07 | 112 |
renal system | 1.62e-07 | 48 |
abdomen element | 3.04e-07 | 54 |
abdominal segment element | 3.04e-07 | 54 |
subdivision of digestive tract | 3.86e-07 | 118 |
nephron tubule epithelium | 6.89e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.23e-23 | 106 |
cell type cancer | 1.45e-18 | 143 |
cancer | 2.07e-15 | 235 |
disease of cellular proliferation | 5.24e-14 | 239 |
adenocarcinoma | 8.77e-07 | 25 |
squamous cell carcinoma | 9.57e-07 | 14 |