FFCP PHASE1:Hg19::chr5:179499086..179499105,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:179499086..179499105,-
|short_description=p3@RNF130
|description=CAGE_peak_3_at_RNF130_5end
|association_with_transcript=0bp_to_ENST00000261947_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55819 | |EntrezGene=55819 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18280 | |HGNC=18280 | ||
|TSSclassifier=strong | |||
|UniProt=Q86XS8 | |UniProt=Q86XS8 | ||
|association_with_transcript=0bp_to_ENST00000261947_5end | |||
|cluster_id=chr5:179499086..179499105,- | |||
|description=CAGE_peak_3_at_RNF130_5end | |||
|id=chr5:179499086..179499105,- | |||
|ontology_enrichment_celltype=CL:0000763!9.82e-28!112;CL:0000049!9.82e-28!112;CL:0000766!2.02e-27!76;CL:0002194!7.61e-25!63;CL:0000576!7.61e-25!63;CL:0000040!7.61e-25!63;CL:0000559!7.61e-25!63;CL:0000557!9.10e-25!71;CL:0000839!5.91e-24!70;CL:0002009!4.45e-23!65;CL:0002057!7.30e-22!42;CL:0000860!1.75e-19!45;CL:0000988!4.36e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.32e-17;39!CL:0000234;1.32e-17;39!CL:0000860;5.22e-17;33!CL:0002057;5.22e-17;33!CL:0000576;9.26e-16;48!CL:0000766;8.64e-14;69!CL:0000763;9.09e-12;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.91e-31,72;CL:0000763,6.74e-30,108;CL:0000049,6.74e-30,108;CL:0002194,1.81e-28,59;CL:0000576,1.81e-28,59;CL:0000040,1.81e-28,59;CL:0000559,1.81e-28,59;CL:0000557,7.97e-28,67;CL:0000839,5.81e-27,66;CL:0002009,2.44e-26,61;CL:0000473,8.39e-26,48;CL:0000234,8.39e-26,48;CL:0000860,5.95e-22,42;CL:0002057,5.95e-22,42;CL:0000988,5.30e-08,177;CL:0000037,1.07e-07,168;CL:0002032,4.63e-07,161;CL:0000837,4.63e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.86e-16;42!CL:0000049;1.86e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.52e-21!80;UBERON:0001474!4.79e-20!86;UBERON:0002405!9.76e-17!115;UBERON:0002390!1.65e-16!102;UBERON:0003061!1.65e-16!102;UBERON:0002193!3.67e-15!112;UBERON:0004765!3.76e-15!101;UBERON:0001434!3.76e-15!101;UBERON:0007023!9.26e-14!115;UBERON:0001049!5.82e-12!57;UBERON:0005068!5.82e-12!57;UBERON:0006241!5.82e-12!57;UBERON:0007135!5.82e-12!57;UBERON:0005743!8.69e-12!86;UBERON:0001017!9.76e-12!82;UBERON:0002616!2.22e-10!59;UBERON:0000073!4.20e-10!94;UBERON:0001016!4.20e-10!94;UBERON:0000955!1.35e-09!69;UBERON:0006238!1.35e-09!69;UBERON:0002780!3.53e-08!41;UBERON:0001890!3.53e-08!41;UBERON:0006240!3.53e-08!41;UBERON:0003075!5.07e-08!86;UBERON:0007284!5.07e-08!86;UBERON:0003080!6.21e-08!42;UBERON:0002346!5.02e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.78e-07;53!UBERON:0002616;1.78e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.05e-24,76;UBERON:0001474,2.53e-22,82;UBERON:0004765,1.27e-19,90;UBERON:0002390,1.93e-18,98;UBERON:0003061,1.93e-18,98;UBERON:0002405,3.69e-18,93;UBERON:0001434,4.08e-17,100;UBERON:0002193,7.87e-17,108;UBERON:0007023,1.41e-13,114;UBERON:0001049,2.24e-12,56;UBERON:0005068,2.24e-12,56;UBERON:0006241,2.24e-12,56;UBERON:0007135,2.24e-12,56;UBERON:0001017,5.87e-12,81;UBERON:0000073,1.26e-11,53;UBERON:0002616,1.26e-11,53;UBERON:0001016,4.23e-10,89;UBERON:0000955,8.41e-10,68;UBERON:0006238,8.41e-10,68;UBERON:0003075,5.81e-09,82;UBERON:0007284,5.81e-09,82;UBERON:0002780,2.75e-08,41;UBERON:0001890,2.75e-08,41;UBERON:0003080,2.75e-08,41;UBERON:0006240,2.75e-08,41;UBERON:0002346,8.02e-08,86;UBERON:0002204,3.14e-07,167;UBERON:0003081,4.59e-07,203 | |||
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| ||
|short_description=p3@RNF130 | |||
}} | }} |
Latest revision as of 10:12, 17 September 2015
Short description: | p3@RNF130 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF130_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261947_5end |
EntrezGene: | RNF130 |
HGNC: | 18280 |
UniProt: | Q86XS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.91e-31 | 72 |
myeloid cell | 6.74e-30 | 108 |
common myeloid progenitor | 6.74e-30 | 108 |
monopoietic cell | 1.81e-28 | 59 |
monocyte | 1.81e-28 | 59 |
monoblast | 1.81e-28 | 59 |
promonocyte | 1.81e-28 | 59 |
granulocyte monocyte progenitor cell | 7.97e-28 | 67 |
myeloid lineage restricted progenitor cell | 5.81e-27 | 66 |
macrophage dendritic cell progenitor | 2.44e-26 | 61 |
defensive cell | 8.39e-26 | 48 |
phagocyte | 8.39e-26 | 48 |
classical monocyte | 5.95e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.95e-22 | 42 |
hematopoietic cell | 5.30e-08 | 177 |
hematopoietic stem cell | 1.07e-07 | 168 |
hematopoietic oligopotent progenitor cell | 4.63e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.63e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.05e-24 | 76 |
bone element | 2.53e-22 | 82 |
skeletal element | 1.27e-19 | 90 |
hematopoietic system | 1.93e-18 | 98 |
blood island | 1.93e-18 | 98 |
immune system | 3.69e-18 | 93 |
skeletal system | 4.08e-17 | 100 |
hemolymphoid system | 7.87e-17 | 108 |
adult organism | 1.41e-13 | 114 |
neural tube | 2.24e-12 | 56 |
neural rod | 2.24e-12 | 56 |
future spinal cord | 2.24e-12 | 56 |
neural keel | 2.24e-12 | 56 |
central nervous system | 5.87e-12 | 81 |
regional part of nervous system | 1.26e-11 | 53 |
regional part of brain | 1.26e-11 | 53 |
nervous system | 4.23e-10 | 89 |
brain | 8.41e-10 | 68 |
future brain | 8.41e-10 | 68 |
neural plate | 5.81e-09 | 82 |
presumptive neural plate | 5.81e-09 | 82 |
regional part of forebrain | 2.75e-08 | 41 |
forebrain | 2.75e-08 | 41 |
anterior neural tube | 2.75e-08 | 41 |
future forebrain | 2.75e-08 | 41 |
neurectoderm | 8.02e-08 | 86 |
musculoskeletal system | 3.14e-07 | 167 |
lateral plate mesoderm | 4.59e-07 | 203 |