FFCP PHASE1:Hg19::chr9:36487582..36487674,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:36487582..36487674,- to FFCP PHASE1:Hg19::chr9:36487582..36487674,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152006 | |EntrezGene=152006 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18052 | |HGNC=18052 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-37bp_to_ENST00000488058_5end | |||
|cluster_id=chr9:36487582..36487674,- | |||
|description=CAGE_peak_1_at_RNF38_5end | |||
|id=chr9:36487582..36487674,- | |||
|ontology_enrichment_celltype=CL:0000738!1.06e-16!140;CL:0000037!1.10e-14!172;CL:0000566!1.10e-14!172;CL:0002032!5.44e-14!165;CL:0000837!5.44e-14!165;CL:0002087!9.60e-14!119;CL:0002031!1.96e-13!124;CL:0000988!1.10e-12!182;CL:0000766!2.25e-10!76;CL:0000557!3.05e-08!71;CL:0000763!8.55e-08!112;CL:0000049!8.55e-08!112;CL:0000838!1.60e-07!52;CL:0000791!2.77e-07!18;CL:0000789!2.77e-07!18;CL:0002420!2.77e-07!18;CL:0002419!2.77e-07!18;CL:0000790!2.77e-07!18;CL:0000542!5.51e-07!53;CL:0000051!5.51e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.64e-07;18!CL:0000789;2.64e-07;18!CL:0002419;2.64e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.48e-17,136;CL:0000037,2.41e-15,168;CL:0002032,1.20e-14,161;CL:0000837,1.20e-14,161;CL:0002087,1.41e-14,115;CL:0002031,3.16e-14,120;CL:0000988,3.49e-13,177;CL:0000766,2.56e-11,72;CL:0000557,4.62e-09,67;CL:0000763,2.39e-08,108;CL:0000049,2.39e-08,108;CL:0000838,1.60e-07,52;CL:0002009,2.13e-07,61;CL:0000839,2.59e-07,66;CL:0000791,2.77e-07,18;CL:0000789,2.77e-07,18;CL:0002420,2.77e-07,18;CL:0002419,2.77e-07,18;CL:0000790,2.77e-07,18;CL:0002194,3.81e-07,59;CL:0000576,3.81e-07,59;CL:0000040,3.81e-07,59;CL:0000559,3.81e-07,59;CL:0000542,5.51e-07,53;CL:0000051,5.51e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;2.64e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.99e-30!115;UBERON:0001017!1.80e-13!82;UBERON:0001049!1.81e-13!57;UBERON:0005068!1.81e-13!57;UBERON:0006241!1.81e-13!57;UBERON:0007135!1.81e-13!57;UBERON:0005743!3.90e-13!86;UBERON:0000073!1.03e-12!94;UBERON:0001016!1.03e-12!94;UBERON:0002616!3.14e-11!59;UBERON:0003080!1.82e-10!42;UBERON:0002780!2.68e-10!41;UBERON:0001890!2.68e-10!41;UBERON:0006240!2.68e-10!41;UBERON:0000955!3.15e-10!69;UBERON:0006238!3.15e-10!69;UBERON:0002193!4.32e-10!112;UBERON:0001893!6.22e-10!34;UBERON:0002020!1.16e-09!34;UBERON:0003528!1.16e-09!34;UBERON:0002791!1.48e-09!33;UBERON:0001869!3.12e-09!32;UBERON:0003075!3.29e-09!86;UBERON:0007284!3.29e-09!86;UBERON:0002390!9.93e-09!102;UBERON:0003061!9.93e-09!102;UBERON:0002346!3.56e-08!90;UBERON:0002619!5.25e-08!22;UBERON:0000956!1.29e-07!25;UBERON:0000203!1.29e-07!25;UBERON:0001950!1.63e-07!20;UBERON:0002405!1.88e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.63e-08;34!UBERON:0007023;2.38e-08;114!UBERON:0002791;2.69e-08;32!UBERON:0001869;2.93e-08;32!UBERON:0003528;3.17e-08;34!UBERON:0002020;3.17e-08;34!UBERON:0002619;4.65e-08;22!UBERON:0002780;7.78e-08;41!UBERON:0001890;7.78e-08;41!UBERON:0000073;9.27e-08;53!UBERON:0002616;9.27e-08;53!UBERON:0000956;1.12e-07;25!UBERON:0000203;1.12e-07;25!UBERON:0001950;1.50e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.23e-30,114;UBERON:0001049,2.71e-13,56;UBERON:0005068,2.71e-13,56;UBERON:0006241,2.71e-13,56;UBERON:0007135,2.71e-13,56;UBERON:0001017,2.73e-13,81;UBERON:0001016,8.23e-13,89;UBERON:0000073,3.03e-12,53;UBERON:0002616,3.03e-12,53;UBERON:0002193,8.98e-11,108;UBERON:0002780,2.68e-10,41;UBERON:0001890,2.68e-10,41;UBERON:0003080,2.68e-10,41;UBERON:0006240,2.68e-10,41;UBERON:0000955,4.69e-10,68;UBERON:0006238,4.69e-10,68;UBERON:0001893,6.22e-10,34;UBERON:0003528,1.16e-09,34;UBERON:0002020,1.16e-09,34;UBERON:0002390,2.22e-09,98;UBERON:0003061,2.22e-09,98;UBERON:0001869,3.12e-09,32;UBERON:0002791,4.03e-09,32;UBERON:0002405,7.02e-09,93;UBERON:0003075,1.55e-08,82;UBERON:0007284,1.55e-08,82;UBERON:0002619,5.25e-08,22;UBERON:0000956,1.29e-07,25;UBERON:0000203,1.29e-07,25;UBERON:0002346,1.56e-07,86;UBERON:0001950,1.63e-07,20 | |||
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| ||
|short_description=p1@RNF38 | |||
}} | }} |
Latest revision as of 09:55, 17 September 2015
Short description: | p1@RNF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF38_5end |
Coexpression cluster: | NA |
Association with transcript: | -37bp_to_ENST00000488058_5end |
EntrezGene: | RNF38 |
HGNC: | 18052 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.48e-17 | 136 |
hematopoietic stem cell | 2.41e-15 | 168 |
hematopoietic oligopotent progenitor cell | 1.20e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.20e-14 | 161 |
nongranular leukocyte | 1.41e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.16e-14 | 120 |
hematopoietic cell | 3.49e-13 | 177 |
myeloid leukocyte | 2.56e-11 | 72 |
granulocyte monocyte progenitor cell | 4.62e-09 | 67 |
myeloid cell | 2.39e-08 | 108 |
common myeloid progenitor | 2.39e-08 | 108 |
lymphoid lineage restricted progenitor cell | 1.60e-07 | 52 |
macrophage dendritic cell progenitor | 2.13e-07 | 61 |
myeloid lineage restricted progenitor cell | 2.59e-07 | 66 |
mature alpha-beta T cell | 2.77e-07 | 18 |
alpha-beta T cell | 2.77e-07 | 18 |
immature T cell | 2.77e-07 | 18 |
mature T cell | 2.77e-07 | 18 |
immature alpha-beta T cell | 2.77e-07 | 18 |
monopoietic cell | 3.81e-07 | 59 |
monocyte | 3.81e-07 | 59 |
monoblast | 3.81e-07 | 59 |
promonocyte | 3.81e-07 | 59 |
lymphocyte | 5.51e-07 | 53 |
common lymphoid progenitor | 5.51e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.23e-30 | 114 |
neural tube | 2.71e-13 | 56 |
neural rod | 2.71e-13 | 56 |
future spinal cord | 2.71e-13 | 56 |
neural keel | 2.71e-13 | 56 |
central nervous system | 2.73e-13 | 81 |
nervous system | 8.23e-13 | 89 |
regional part of nervous system | 3.03e-12 | 53 |
regional part of brain | 3.03e-12 | 53 |
hemolymphoid system | 8.98e-11 | 108 |
regional part of forebrain | 2.68e-10 | 41 |
forebrain | 2.68e-10 | 41 |
anterior neural tube | 2.68e-10 | 41 |
future forebrain | 2.68e-10 | 41 |
brain | 4.69e-10 | 68 |
future brain | 4.69e-10 | 68 |
telencephalon | 6.22e-10 | 34 |
brain grey matter | 1.16e-09 | 34 |
gray matter | 1.16e-09 | 34 |
hematopoietic system | 2.22e-09 | 98 |
blood island | 2.22e-09 | 98 |
cerebral hemisphere | 3.12e-09 | 32 |
regional part of telencephalon | 4.03e-09 | 32 |
immune system | 7.02e-09 | 93 |
neural plate | 1.55e-08 | 82 |
presumptive neural plate | 1.55e-08 | 82 |
regional part of cerebral cortex | 5.25e-08 | 22 |
cerebral cortex | 1.29e-07 | 25 |
pallium | 1.29e-07 | 25 |
neurectoderm | 1.56e-07 | 86 |
neocortex | 1.63e-07 | 20 |