FFCP PHASE1:Hg19::chr6:26458171..26458208,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:26458171..26458208,+ to FFCP PHASE1:Hg19::chr6:26458171..26458208,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11120 | |EntrezGene=11120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1136 | |HGNC=1136 | ||
|TSSclassifier=strong | |||
|UniProt=B9ZVU6,Q96AV7,E9PGR4,C9JNC3,B4DLP9,Q7KYR7 | |UniProt=B9ZVU6,Q96AV7,E9PGR4,C9JNC3,B4DLP9,Q7KYR7 | ||
|association_with_transcript=0bp_to_ENST00000265424,ENST00000429381,ENST00000469185,ENST00000493173,ENST00000541522,NM_001197233,uc003nib.1,uc003nic.1,uc003nid.1,uc011dko.1_5end | |||
|cluster_id=chr6:26458171..26458208,+ | |||
|description=CAGE_peak_1_at_BTN2A1_5end | |||
|id=chr6:26458171..26458208,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.48e-21!42;CL:0000766!5.72e-21!76;CL:0000860!2.49e-19!45;CL:0000557!4.58e-19!71;CL:0002009!2.67e-17!65;CL:0002194!2.07e-16!63;CL:0000576!2.07e-16!63;CL:0000040!2.07e-16!63;CL:0000559!2.07e-16!63;CL:0000839!9.01e-16!70;CL:0000763!4.70e-09!112;CL:0000049!4.70e-09!112;CL:0000738!1.84e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.88e-20;33!CL:0002057;9.88e-20;33!CL:0000473;1.34e-16;39!CL:0000234;1.34e-16;39!CL:0000576;1.65e-12;48!CL:0000766;2.97e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.46e-22,72;CL:0000473,1.66e-21,48;CL:0000234,1.66e-21,48;CL:0000860,4.48e-21,42;CL:0002057,4.48e-21,42;CL:0000557,2.96e-20,67;CL:0002009,1.75e-18,61;CL:0002194,1.44e-17,59;CL:0000576,1.44e-17,59;CL:0000040,1.44e-17,59;CL:0000559,1.44e-17,59;CL:0000839,8.94e-17,66;CL:0000763,1.99e-09,108;CL:0000049,1.99e-09,108;CL:0000738,1.03e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;9.72e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.32e-16!102;UBERON:0003061!1.32e-16!102;UBERON:0002193!4.64e-16!112;UBERON:0002371!4.50e-15!80;UBERON:0001474!1.89e-14!86;UBERON:0007023!2.42e-14!115;UBERON:0003081!2.59e-12!216;UBERON:0004765!3.07e-12!101;UBERON:0001434!3.07e-12!101;UBERON:0000467!7.19e-11!625;UBERON:0000480!1.52e-10!626;UBERON:0002204!1.79e-10!167;UBERON:0002405!2.19e-10!115;UBERON:0000468!3.75e-10!659;UBERON:0001049!2.73e-08!57;UBERON:0005068!2.73e-08!57;UBERON:0006241!2.73e-08!57;UBERON:0007135!2.73e-08!57;UBERON:0001017!1.23e-07!82;UBERON:0000955!2.86e-07!69;UBERON:0006238!2.86e-07!69;UBERON:0000923!3.02e-07!604;UBERON:0005291!3.02e-07!604;UBERON:0006598!3.02e-07!604;UBERON:0002532!3.02e-07!604;UBERON:0002050!3.03e-07!605;UBERON:0005423!3.03e-07!605;UBERON:0002616!3.34e-07!59;UBERON:0000062!6.78e-07!511;UBERON:0005743!7.10e-07!86;UBERON:0000479!9.05e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.49e-17,98;UBERON:0003061,2.49e-17,98;UBERON:0002193,1.06e-16,108;UBERON:0002371,6.48e-16,76;UBERON:0001474,3.34e-15,82;UBERON:0002405,1.54e-14,93;UBERON:0003081,2.58e-14,203;UBERON:0007023,4.72e-14,114;UBERON:0004765,1.17e-12,90;UBERON:0001434,1.08e-11,100;UBERON:0002204,1.04e-09,167;UBERON:0000926,1.45e-09,315;UBERON:0004120,1.45e-09,315;UBERON:0006603,1.45e-09,315;UBERON:0002050,5.92e-09,564;UBERON:0000923,6.80e-09,560;UBERON:0010316,6.80e-09,560;UBERON:0005291,6.80e-09,560;UBERON:0006598,6.80e-09,560;UBERON:0010317,6.80e-09,560;UBERON:0002532,6.80e-09,560;UBERON:0005423,8.14e-09,581;UBERON:0000479,1.22e-08,773;UBERON:0001049,5.32e-08,56;UBERON:0005068,5.32e-08,56;UBERON:0006241,5.32e-08,56;UBERON:0007135,5.32e-08,56;UBERON:0000073,7.77e-08,53;UBERON:0002616,7.77e-08,53;UBERON:0001017,2.21e-07,81;UBERON:0000922,2.86e-07,592;UBERON:0001016,4.32e-07,89;UBERON:0000955,5.22e-07,68;UBERON:0006238,5.22e-07,68 | |||
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| ||
|short_description=p1@BTN2A1 | |||
}} | }} |
Latest revision as of 09:54, 17 September 2015
Short description: | p1@BTN2A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BTN2A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265424, ENST00000429381, ENST00000469185, ENST00000493173, ENST00000541522, NM_001197233, uc003nib.1, uc003nic.1, uc003nid.1, uc011dko.1_5end |
EntrezGene: | BTN2A1 |
HGNC: | 1136 |
UniProt: | B9ZVU6Q96AV7E9PGR4C9JNC3B4DLP9Q7KYR7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.46e-22 | 72 |
defensive cell | 1.66e-21 | 48 |
phagocyte | 1.66e-21 | 48 |
classical monocyte | 4.48e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.48e-21 | 42 |
granulocyte monocyte progenitor cell | 2.96e-20 | 67 |
macrophage dendritic cell progenitor | 1.75e-18 | 61 |
monopoietic cell | 1.44e-17 | 59 |
monocyte | 1.44e-17 | 59 |
monoblast | 1.44e-17 | 59 |
promonocyte | 1.44e-17 | 59 |
myeloid lineage restricted progenitor cell | 8.94e-17 | 66 |
myeloid cell | 1.99e-09 | 108 |
common myeloid progenitor | 1.99e-09 | 108 |
leukocyte | 1.03e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.49e-17 | 98 |
blood island | 2.49e-17 | 98 |
hemolymphoid system | 1.06e-16 | 108 |
bone marrow | 6.48e-16 | 76 |
bone element | 3.34e-15 | 82 |
immune system | 1.54e-14 | 93 |
lateral plate mesoderm | 2.58e-14 | 203 |
adult organism | 4.72e-14 | 114 |
skeletal element | 1.17e-12 | 90 |
skeletal system | 1.08e-11 | 100 |
musculoskeletal system | 1.04e-09 | 167 |
mesoderm | 1.45e-09 | 315 |
mesoderm-derived structure | 1.45e-09 | 315 |
presumptive mesoderm | 1.45e-09 | 315 |
embryonic structure | 5.92e-09 | 564 |
germ layer | 6.80e-09 | 560 |
germ layer / neural crest | 6.80e-09 | 560 |
embryonic tissue | 6.80e-09 | 560 |
presumptive structure | 6.80e-09 | 560 |
germ layer / neural crest derived structure | 6.80e-09 | 560 |
epiblast (generic) | 6.80e-09 | 560 |
developing anatomical structure | 8.14e-09 | 581 |
tissue | 1.22e-08 | 773 |
neural tube | 5.32e-08 | 56 |
neural rod | 5.32e-08 | 56 |
future spinal cord | 5.32e-08 | 56 |
neural keel | 5.32e-08 | 56 |
regional part of nervous system | 7.77e-08 | 53 |
regional part of brain | 7.77e-08 | 53 |
central nervous system | 2.21e-07 | 81 |
embryo | 2.86e-07 | 592 |
nervous system | 4.32e-07 | 89 |
brain | 5.22e-07 | 68 |
future brain | 5.22e-07 | 68 |