FFCP PHASE1:Hg19::chr5:179249956..179250009,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:179249956..179250009,+
|short_description=p4@SQSTM1
|description=CAGE_peak_4_at_SQSTM1_5end
|association_with_transcript=471bp_to_ENST00000360718,uc003mkx....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8878 | |EntrezGene=8878 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |HGNC=11280 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=471bp_to_ENST00000360718,uc003mkx.2_5end | |||
|cluster_id=chr5:179249956..179250009,+ | |||
|coexpression_cluster_id=C1276 | |||
|description=CAGE_peak_4_at_SQSTM1_5end | |||
|id=chr5:179249956..179250009,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.22e-12!42;CL:0000860!4.56e-12!45;CL:0002009!4.98e-11!65;CL:0000557!5.46e-11!71;CL:0002194!9.37e-11!63;CL:0000576!9.37e-11!63;CL:0000040!9.37e-11!63;CL:0000559!9.37e-11!63;CL:0000839!9.59e-11!70;CL:0000766!2.29e-08!76;CL:0000548!8.35e-08!679;CL:0000004!8.35e-08!679;CL:0000255!8.35e-08!679;CL:0000222!1.07e-07!119;CL:0000012!1.97e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.20e-19;33!CL:0002057;2.20e-19;33!CL:0000473;3.98e-17;39!CL:0000234;3.98e-17;39!CL:0000576;3.54e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.97e-15,48;CL:0000234,2.97e-15,48;CL:0000860,2.75e-13,42;CL:0002057,2.75e-13,42;CL:0000557,4.60e-12,67;CL:0002009,6.09e-12,61;CL:0002194,1.36e-11,59;CL:0000576,1.36e-11,59;CL:0000040,1.36e-11,59;CL:0000559,1.36e-11,59;CL:0000839,2.73e-11,66;CL:0000766,1.54e-09,72;CL:0000222,1.08e-07,121;CL:0000077,4.71e-07,19 | |||
|ontology_enrichment_development_v019=CL:0002057;2.68e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.05e-13!448;UBERON:0004120!1.05e-13!448;UBERON:0006603!1.05e-13!448;UBERON:0002204!8.61e-13!167;UBERON:0002371!2.20e-10!80;UBERON:0002405!7.27e-09!115;UBERON:0003081!1.33e-08!216;UBERON:0001474!1.42e-08!86;UBERON:0004765!4.27e-08!101;UBERON:0001434!4.27e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.83e-15,315;UBERON:0004120,3.83e-15,315;UBERON:0006603,3.83e-15,315;UBERON:0002204,2.42e-13,167;UBERON:0002371,9.06e-12,76;UBERON:0002405,7.27e-11,93;UBERON:0003081,8.23e-11,203;UBERON:0001474,4.93e-10,82;UBERON:0004765,1.19e-09,90;UBERON:0001434,1.29e-08,100;UBERON:0002193,1.34e-07,108 | |||
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| ||
|short_description=p4@SQSTM1 | |||
}} | }} |
Latest revision as of 09:50, 17 September 2015
Short description: | p4@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SQSTM1_5end |
Coexpression cluster: | C1276_mesothelioma_CD14_leiomyoma_bile_Mesothelial_migratory_mesenchymal |
Association with transcript: | 471bp_to_ENST00000360718, uc003mkx.2_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.97e-15 | 48 |
phagocyte | 2.97e-15 | 48 |
classical monocyte | 2.75e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.75e-13 | 42 |
granulocyte monocyte progenitor cell | 4.60e-12 | 67 |
macrophage dendritic cell progenitor | 6.09e-12 | 61 |
monopoietic cell | 1.36e-11 | 59 |
monocyte | 1.36e-11 | 59 |
monoblast | 1.36e-11 | 59 |
promonocyte | 1.36e-11 | 59 |
myeloid lineage restricted progenitor cell | 2.73e-11 | 66 |
myeloid leukocyte | 1.54e-09 | 72 |
mesodermal cell | 1.08e-07 | 121 |
mesothelial cell | 4.71e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.83e-15 | 315 |
mesoderm-derived structure | 3.83e-15 | 315 |
presumptive mesoderm | 3.83e-15 | 315 |
musculoskeletal system | 2.42e-13 | 167 |
bone marrow | 9.06e-12 | 76 |
immune system | 7.27e-11 | 93 |
lateral plate mesoderm | 8.23e-11 | 203 |
bone element | 4.93e-10 | 82 |
skeletal element | 1.19e-09 | 90 |
skeletal system | 1.29e-08 | 100 |
hemolymphoid system | 1.34e-07 | 108 |