FFCP PHASE1:Hg19::chr9:36400423..36400439,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152006 | |EntrezGene=152006 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18052 | |HGNC=18052 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H0F5 | |UniProt=Q9H0F5 | ||
|association_with_transcript=-127bp_to_ENST00000353739,NM_022781,NM_194329,uc003zzh.2,uc003zzi.2_5end | |association_with_transcript=-127bp_to_ENST00000353739,NM_022781,NM_194329,uc003zzh.2,uc003zzi.2_5end | ||
|cluster_id=chr9:36400423..36400439,- | |||
|description=CAGE_peak_7_at_RNF38_5end | |description=CAGE_peak_7_at_RNF38_5end | ||
|id=chr9:36400423..36400439,- | |id=chr9:36400423..36400439,- | ||
|ontology_enrichment_celltype=CL:0000066!4.44e-31!254;CL:0000076!2.62e-11!62;CL:0000223!3.45e-09!59;CL:0000220!3.85e-09!246;CL:0002321!4.18e-09!248;CL:0002139!1.51e-07!24;CL:0000063!7.39e-07!578 | |ontology_enrichment_celltype=CL:0000066!4.44e-31!254;CL:0000076!2.62e-11!62;CL:0000223!3.45e-09!59;CL:0000220!3.85e-09!246;CL:0002321!4.18e-09!248;CL:0002139!1.51e-07!24;CL:0000063!7.39e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000154;4.49e-08;6!CL:0000150;1.35e-07;9 | |ontology_enrichment_celltype_v019=CL:0000154;4.49e-08;6!CL:0000150;1.35e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.44e-20,253;CL:0000076,8.12e-09,63;CL:0000154,7.82e-08,6;CL:0000150,3.75e-07,9;CL:0002144,4.42e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!5.42e-19!106;DOID:0050687!3.05e-14!143;DOID:162!3.39e-12!235;DOID:14566!2.20e-11!239 | |ontology_enrichment_disease=DOID:305!5.42e-19!106;DOID:0050687!3.05e-14!143;DOID:162!3.39e-12!235;DOID:14566!2.20e-11!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.65e-08;14 | |ontology_enrichment_disease_v019=DOID:1749;2.65e-08;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,3.28e-13,106;DOID:0050687,1.93e-09,143;DOID:1749,2.69e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000487!3.54e-07!22;UBERON:0000466!6.44e-07!126 | |ontology_enrichment_uberon=UBERON:0000487!3.54e-07!22;UBERON:0000466!6.44e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;1.60e-07;7!UBERON:0005631;5.29e-07;10!UBERON:0000158;5.29e-07;10!UBERON:0000487;6.52e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0000305;1.60e-07;7!UBERON:0005631;5.29e-07;10!UBERON:0000158;5.29e-07;10!UBERON:0000487;6.52e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004871,7.58e-09,8;UBERON:0009569,5.73e-08,112;UBERON:0000305,3.13e-07,7;UBERON:0000487,3.17e-07,22;UBERON:0010523,4.42e-07,3;UBERON:0001915,4.42e-07,3;UBERON:0001982,4.42e-07,3 | |||
|phase1_expression=1.09007027562334,0,1.26858963686374,2.00146596706261,0.446961094427288,0,0,0,0,1.22866968250754,0,1.09220686065086,1.05506791291381,0,0,0,0,0,0,0.246242116153576,0,0.940364164434263,0.286235987131057,1.36874425072884,0.627713197974014,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0.30120591877825,0.739508020333575,0.0774672005803016,0.426507697462265,0,0,0,0,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0.575384784644301,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0.997318288108159,0.426224750532694,0.290209238628584,0.56738522469114,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,2.64342657158052,0.560508562981536,0.526768169550154,0,0.786021525498329,0.205601498999509,0,0,0.473447805734733,0,0.111410456885174,0,0,0,0,0,0,0,0.289803085735052,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.511450247374121,0.361439152384566,0.50133791063589,0.289693037921647,0,0.486634870302636,0.850813354476611,0.443458794925128,0.790513071238134,0.851363990735132,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0.371457501329565,0.39752481473341,0,0.694281003215189,0.56530794192401,0.838998872419812,0.275118041940067,0.417989933073621,1.29208379584664,1.77883131343355,2.34304428935269,2.01414658554573,1.52054421143703,1.70843440283719,1.47065232138347,2.43042584364528,0.982297011124877,0.44905874525234,0.900891843866578,0,1.89853131913626,0.732806975721629,0,0,0,0.993943903390637,0.25326102332916,0.794455084879313,0,0,0.560677600142307,0,0.49333509683432,0,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.491337269247072,0.206651562351531,0,0.247266929278557,0,0,0.336672227908132,0.250237039743928,0.554128230968366,0.438977620880838,0,0,0.226864366320042,0.358779271377724,0.427114777637135,0.211931901159562,0,0.206105058476878,0.515281080091258,0.18611685633159,0.843881661206331,0.292311015483596,0.252433774244115,0.184099797284599,0.323292113637624,0.355009592516614,0.906768884048762,0.169560592310488,0.386521706326594,0.272746120590835,0.286804595389004,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0,0.72995471815166,0,0.643240938192885,0,0,0,0.118306800039844,0.505754070234305,0.482022059766964,0.110293972732394,0.435758888184812,0.949082476444386,0.134831308160164,0.196221465125346,0.38474715694639,0.738155454624648,1.40241773803446,0.4115740113314,0,1.26755034821831,0,0,0,1.10689594688802,0.686271241194102,1.53650399572076,0,0.301586917234893,0.648119116109707,0.325808305310325,1.03993478527958,0,0.695582429850461,0.587043471179108,1.01056513432752,0.462985512576611,0.570762456703795,0,4.29243081047436,0,0.234004265139238,0,0,1.17587489739202,1.13420077793909,0,0.290633938513962,1.15014803749563,1.47798971368783,0.088048434013226,0.207328115540772,0.576479813667846,0.12624243342638,0.253991577168676,0,1.17217447210047,0,0.205654985406647,0.300343057843917,1.14330573052231,0.224262168690721,0.43596006883328,0.51336800074665,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.285955987316295,1.08524321078289,0.823240336780769,0,0,0,0.602878754119172,0,1.49959486773086,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0.112085143993527,0.394061520403854,0.431255149719035,0.128343036279748,0.254094624222463,0,0,0.167516265334349,0,0,0,0.414415513436035,0.12269149171914,0,0.271265023699736,0.207970861530807,0.713715955188647,0.630809660135739,0.585707074963566,0.300946099727719,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0,0.106727557803444,0.303127571446259,0,0.604780586659361,1.48864684691266,0.920771839728375,0.841980283299221,0.640695746278505,1.02341449813341,0.321707842287215,1.48418066444991,0.154209693802656,0.177561725313127,0.164254312027618,0,0.116210378459959,0.362578348774867,0.601519410909855,0.920809889358963,0.114814448164607,0,0.524497659837696,1.35359883872224,0.616122696835318,0.784349769176855,0,1.05551628892876,0,0.510281115829547,0.215915916102139,0,1.08378575017541,0,0.509752546090077,0,0.895499018888713,0.657779629937804,1.3071772551245,0.512900250232778,2.62411716559765,0,0.721287081534056,0.0915694648183434,0,1.14853107599234,1.30012049207304,1.6068392984416,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0.290033387828457,0.255679882248303,0.267096106940212,0.661139661443912,0.384380134730212,0.255225424989168,0.50578890427775,0.929691098594572,0.31481234683064,0,0.308033580176089,0,0.869932992075073,0,0,0.372158369359667,0,0.190630193923825,0,0.42793898803392,0.318203247925937,0,1.07923474549989,0.274537029736055,0.353437207037059,0,1.58510321173008,0,0,0,0,0,0,0,0,0,1.31535265576129,0,0,0,0.30982349809975,0,0.143411352204052,0.589494246078727,0,0,0,0,0.75894634753143,0.699869440489966,0.192444225451024,0,1.08890984861323,0.376575203107117,0,0,0.443430153536676,0.229723400206959,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,2.45040215981032,0,0.1442692129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| ||
|short_description=p7@RNF38 | |short_description=p7@RNF38 | ||
}} | }} |
Latest revision as of 09:43, 17 September 2015
Short description: | p7@RNF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RNF38_5end |
Coexpression cluster: | NA |
Association with transcript: | -127bp_to_ENST00000353739, NM_022781, NM_194329, uc003zzh.2, uc003zzi.2_5end |
EntrezGene: | RNF38 |
HGNC: | 18052 |
UniProt: | Q9H0F5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.44e-20 | 253 |
squamous epithelial cell | 8.12e-09 | 63 |
protein secreting cell | 7.82e-08 | 6 |
glandular epithelial cell | 3.75e-07 | 9 |
capillary endothelial cell | 4.42e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
somatic layer of lateral plate mesoderm | 7.58e-09 | 8 |
subdivision of trunk | 5.73e-08 | 112 |
amnion | 3.13e-07 | 7 |
simple squamous epithelium | 3.17e-07 | 22 |
microcirculatory vessel | 4.42e-07 | 3 |
endothelium of capillary | 4.42e-07 | 3 |
capillary | 4.42e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.28e-13 | 106 |
cell type cancer | 1.93e-09 | 143 |
squamous cell carcinoma | 2.69e-08 | 14 |