FFCP PHASE1:Hg19::chr1:27953007..27953025,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2268 | |EntrezGene=2268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3697 | |HGNC=3697 | ||
|TSSclassifier=strong | |||
|UniProt=P09769 | |UniProt=P09769 | ||
|association_with_transcript=54bp_to_ENST00000374003_5end | |association_with_transcript=54bp_to_ENST00000374003_5end | ||
|cluster_id=chr1:27953007..27953025,- | |||
|description=CAGE_peak_12_at_FGR_5end | |description=CAGE_peak_12_at_FGR_5end | ||
|id=chr1:27953007..27953025,- | |id=chr1:27953007..27953025,- | ||
|ontology_enrichment_celltype=CL:0000542!6.36e-56!53;CL:0000051!6.36e-56!53;CL:0000838!3.95e-54!52;CL:0002087!1.60e-44!119;CL:0000738!4.86e-43!140;CL:0000945!1.21e-35!24;CL:0000826!1.21e-35!24;CL:0002031!6.45e-35!124;CL:0000037!2.58e-32!172;CL:0000566!2.58e-32!172;CL:0002032!8.13e-30!165;CL:0000837!8.13e-30!165;CL:0000988!9.73e-30!182;CL:0000625!8.41e-28!11;CL:0000236!2.80e-21!14;CL:0000791!1.17e-18!18;CL:0000789!1.17e-18!18;CL:0002420!1.17e-18!18;CL:0002419!1.17e-18!18;CL:0000790!1.17e-18!18;CL:0000084!4.57e-15!25;CL:0000827!4.57e-15!25;CL:0000623!4.84e-09!3;CL:0000825!4.84e-09!3;CL:0000767!2.27e-08!3;CL:0000134!2.81e-08!358;CL:0000842!5.03e-08!3;CL:0002320!7.14e-08!365 | |ontology_enrichment_celltype=CL:0000542!6.36e-56!53;CL:0000051!6.36e-56!53;CL:0000838!3.95e-54!52;CL:0002087!1.60e-44!119;CL:0000738!4.86e-43!140;CL:0000945!1.21e-35!24;CL:0000826!1.21e-35!24;CL:0002031!6.45e-35!124;CL:0000037!2.58e-32!172;CL:0000566!2.58e-32!172;CL:0002032!8.13e-30!165;CL:0000837!8.13e-30!165;CL:0000988!9.73e-30!182;CL:0000625!8.41e-28!11;CL:0000236!2.80e-21!14;CL:0000791!1.17e-18!18;CL:0000789!1.17e-18!18;CL:0002420!1.17e-18!18;CL:0002419!1.17e-18!18;CL:0000790!1.17e-18!18;CL:0000084!4.57e-15!25;CL:0000827!4.57e-15!25;CL:0000623!4.84e-09!3;CL:0000825!4.84e-09!3;CL:0000767!2.27e-08!3;CL:0000134!2.81e-08!358;CL:0000842!5.03e-08!3;CL:0002320!7.14e-08!365 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.33e-46;24!CL:0000542;1.98e-41;53!CL:0000625;1.76e-40;11!CL:0000236;7.15e-28;13!CL:0000791;5.39e-24;18!CL:0000789;5.39e-24;18!CL:0002419;5.39e-24;18!CL:0000084;1.71e-20;25!CL:0000623;5.22e-15;3!CL:0002087;9.48e-10;104!CL:0000767;6.72e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.33e-74,52;CL:0000542,7.90e-73,53;CL:0000051,7.90e-73,53;CL:0000945,5.99e-46,24;CL:0000826,5.99e-46,24;CL:0000625,9.41e-41,11;CL:0002087,4.66e-34,115;CL:0000738,4.88e-34,136;CL:0000236,1.35e-31,14;CL:0002031,3.72e-30,120;CL:0000037,3.63e-26,168;CL:0002032,7.99e-26,161;CL:0000837,7.99e-26,161;CL:0000988,1.84e-24,177;CL:0000791,3.71e-24,18;CL:0000789,3.71e-24,18;CL:0002420,3.71e-24,18;CL:0002419,3.71e-24,18;CL:0000790,3.71e-24,18;CL:0000084,1.28e-20,25;CL:0000827,1.28e-20,25;CL:0000623,6.62e-15,3;CL:0000825,6.62e-15,3;CL:0000134,1.68e-08,354;CL:0002320,3.42e-08,361;CL:0000219,4.17e-07,386;CL:0000767,6.33e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.98e-41;53!CL:0000790;5.39e-24;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.06e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.10e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.22e-18!15;UBERON:0000179!1.22e-18!15;UBERON:0000463!1.22e-18!15;UBERON:0002390!8.21e-12!102;UBERON:0003061!8.21e-12!102;UBERON:0002193!4.82e-11!112;UBERON:0004177!3.73e-08!7;UBERON:0002106!5.41e-08!3;UBERON:0004854!5.41e-08!3;UBERON:0009034!5.41e-08!3;UBERON:0002095!5.41e-08!3;UBERON:0004782!5.41e-08!3;UBERON:0003281!5.41e-08!3;UBERON:0009664!5.41e-08!3;UBERON:0002296!5.41e-08!3;UBERON:0005602!5.41e-08!3;UBERON:0001179!5.41e-08!3;UBERON:0006293!5.41e-08!3;UBERON:0002384!7.86e-08!375 | |ontology_enrichment_uberon=UBERON:0000178!1.22e-18!15;UBERON:0000179!1.22e-18!15;UBERON:0000463!1.22e-18!15;UBERON:0002390!8.21e-12!102;UBERON:0003061!8.21e-12!102;UBERON:0002193!4.82e-11!112;UBERON:0004177!3.73e-08!7;UBERON:0002106!5.41e-08!3;UBERON:0004854!5.41e-08!3;UBERON:0009034!5.41e-08!3;UBERON:0002095!5.41e-08!3;UBERON:0004782!5.41e-08!3;UBERON:0003281!5.41e-08!3;UBERON:0009664!5.41e-08!3;UBERON:0002296!5.41e-08!3;UBERON:0005602!5.41e-08!3;UBERON:0001179!5.41e-08!3;UBERON:0006293!5.41e-08!3;UBERON:0002384!7.86e-08!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.65e-18;15!UBERON:0000179;4.65e-18;15!UBERON:0000463;4.65e-18;15!UBERON:0002390;1.15e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.88e-18,15;UBERON:0000179,4.88e-18,15;UBERON:0000463,4.88e-18,15;UBERON:0002384,9.02e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59805579543034,2.54511827294832,2.83358812729245,1.57345710739562,2.68680578668049,0.77408061658038,0,0,0,2.09161441566814,5.11809236954717,0,1.10799081706375,0.200544447470142,0.868043482863407,0,0,0,0,0,0.242584061187816,0.464858073811369,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,1.75996244461323,4.91524750135918,4.44754626931777,3.41384178053206,6.00593980554019,1.72425731986345,3.30522436392431,7.63243003628291,0,0.587237189370939,1.52909291250092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,2.86708872891687,3.25541726928209,3.8018081777935,2.86092726247768,2.94369205655162,3.74792179657038,3.31488152861624,2.46338399076314,2.01606743224732,1.87208137048455,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,4.3346767244424,2.58753089831421,3.20857590699371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,2.84823593587081,1.19115887728894,1.23408681925858,1.94541993357815,2.70015718619057,5.55187623405989,0,0,0,0.185803175125719,0,10.0309999121264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,1.15233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.515663103788617,4.29746970477194,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0,0,0,0.202117188958219,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59805579543034,2.54511827294832,2.83358812729245,1.57345710739562,2.68680578668049,0.77408061658038,0,0,0,2.09161441566814,5.11809236954717,0,1.10799081706375,0.200544447470142,0.868043482863407,0,0,0,0,0,0.242584061187816,0.464858073811369,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,1.75996244461323,4.91524750135918,4.44754626931777,3.41384178053206,6.00593980554019,1.72425731986345,3.30522436392431,7.63243003628291,0,0.587237189370939,1.52909291250092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,2.86708872891687,3.25541726928209,3.8018081777935,2.86092726247768,2.94369205655162,3.74792179657038,3.31488152861624,2.46338399076314,2.01606743224732,1.87208137048455,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,4.3346767244424,2.58753089831421,3.20857590699371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,2.84823593587081,1.19115887728894,1.23408681925858,1.94541993357815,2.70015718619057,5.55187623405989,0,0,0,0.185803175125719,0,10.0309999121264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,1.15233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.515663103788617,4.29746970477194,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0,0,0,0.202117188958219,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0.961705476909699 | ||
|short_description=p12@FGR | |short_description=p12@FGR | ||
}} | }} |
Latest revision as of 08:23, 17 September 2015
Short description: | p12@FGR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_FGR_5end |
Coexpression cluster: | NA |
Association with transcript: | 54bp_to_ENST00000374003_5end |
EntrezGene: | FGR |
HGNC: | 3697 |
UniProt: | P09769 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.33e-74 | 52 |
lymphocyte | 7.90e-73 | 53 |
common lymphoid progenitor | 7.90e-73 | 53 |
lymphocyte of B lineage | 5.99e-46 | 24 |
pro-B cell | 5.99e-46 | 24 |
CD8-positive, alpha-beta T cell | 9.41e-41 | 11 |
nongranular leukocyte | 4.66e-34 | 115 |
leukocyte | 4.88e-34 | 136 |
B cell | 1.35e-31 | 14 |
hematopoietic lineage restricted progenitor cell | 3.72e-30 | 120 |
hematopoietic stem cell | 3.63e-26 | 168 |
hematopoietic oligopotent progenitor cell | 7.99e-26 | 161 |
hematopoietic multipotent progenitor cell | 7.99e-26 | 161 |
hematopoietic cell | 1.84e-24 | 177 |
mature alpha-beta T cell | 3.71e-24 | 18 |
alpha-beta T cell | 3.71e-24 | 18 |
immature T cell | 3.71e-24 | 18 |
mature T cell | 3.71e-24 | 18 |
immature alpha-beta T cell | 3.71e-24 | 18 |
T cell | 1.28e-20 | 25 |
pro-T cell | 1.28e-20 | 25 |
natural killer cell | 6.62e-15 | 3 |
pro-NK cell | 6.62e-15 | 3 |
mesenchymal cell | 1.68e-08 | 354 |
connective tissue cell | 3.42e-08 | 361 |
motile cell | 4.17e-07 | 386 |
basophil | 6.33e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.88e-18 | 15 |
haemolymphatic fluid | 4.88e-18 | 15 |
organism substance | 4.88e-18 | 15 |
connective tissue | 9.02e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.10e-07 | 10 |