FFCP PHASE1:Hg19::chr9:35685667..35685687,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:35685667..35685687,- to FFCP PHASE1:Hg19::chr9:35685667..35685687,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7169 | |EntrezGene=7169 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12011 | |HGNC=12011 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-127bp_to_ENST00000486018_5end | |||
|cluster_id=chr9:35685667..35685687,- | |||
|coexpression_cluster_id=C638 | |||
|description=CAGE_peak_7_at_TPM2_5end | |||
|id=chr9:35685667..35685687,- | |||
|ontology_enrichment_celltype=CL:0000055!1.38e-21!180;CL:0000680!7.05e-18!57;CL:0000056!7.05e-18!57;CL:0000355!7.05e-18!57;CL:0000187!1.09e-17!54;CL:0000183!2.36e-17!59;CL:0000393!1.25e-15!60;CL:0000211!1.25e-15!60;CL:0000192!1.88e-15!42;CL:0000514!1.88e-15!42;CL:0000359!6.62e-13!32;CL:0000222!9.69e-12!119;CL:0000057!1.25e-10!75;CL:0002321!4.54e-07!248;CL:0000220!5.81e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.40e-16;32!CL:0000192;4.04e-10;43!CL:0000187;2.56e-07;55!CL:0002594;3.59e-07;4!CL:0000393;4.28e-07;61!CL:0000211;4.28e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.27e-16,32;CL:0000680,1.67e-15,58;CL:0000056,1.67e-15,58;CL:0000355,1.67e-15,58;CL:0000192,1.22e-14,43;CL:0000514,1.22e-14,43;CL:0000187,1.80e-14,55;CL:0000393,2.96e-12,61;CL:0000211,2.96e-12,61;CL:0002594,2.78e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;4.04e-10;43!CL:0000355;2.36e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.76e-23!83;UBERON:0002329!6.76e-23!83;UBERON:0003077!6.76e-23!83;UBERON:0003059!6.76e-23!83;UBERON:0007282!6.76e-23!83;UBERON:0009618!6.76e-23!83;UBERON:0007285!6.76e-23!83;UBERON:0004290!1.06e-22!70;UBERON:0001134!9.59e-21!61;UBERON:0002036!9.59e-21!61;UBERON:0003082!9.59e-21!61;UBERON:0002385!1.03e-20!63;UBERON:0001015!1.03e-20!63;UBERON:0000383!1.03e-20!63;UBERON:0000486!6.25e-19!82;UBERON:0005256!7.67e-14!143;UBERON:0000481!2.49e-11!347;UBERON:0003104!2.87e-11!238;UBERON:0009142!2.87e-11!238;UBERON:0002100!5.17e-11!216;UBERON:0000475!1.33e-10!365;UBERON:0001637!4.18e-10!42;UBERON:0003509!4.18e-10!42;UBERON:0004572!4.18e-10!42;UBERON:0004573!3.69e-08!33;UBERON:0004571!3.69e-08!33;UBERON:0000468!8.23e-08!659;UBERON:0004872!1.07e-07!84;UBERON:0003102!2.03e-07!95;UBERON:0000490!4.39e-07!138;UBERON:0001981!7.38e-07!60;UBERON:0007500!7.38e-07!60;UBERON:0004537!7.38e-07!60;UBERON:0006965!7.38e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.75e-09;31!UBERON:0001015;1.75e-09;31!UBERON:0000383;1.75e-09;31!UBERON:0004573;1.56e-07;33!UBERON:0004571;1.56e-07;33!UBERON:0001310;3.59e-07;4!UBERON:0001637;3.64e-07;42!UBERON:0003509;3.64e-07;42!UBERON:0004572;3.64e-07;42!UBERON:0001134;6.69e-07;16!UBERON:0002036;6.69e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.57e-22,73;UBERON:0002329,1.88e-21,71;UBERON:0003059,1.88e-21,71;UBERON:0007282,1.88e-21,71;UBERON:0004290,1.88e-21,71;UBERON:0009618,1.88e-21,71;UBERON:0003077,5.44e-21,72;UBERON:0007285,5.44e-21,72;UBERON:0007503,5.97e-21,78;UBERON:0002385,1.26e-20,64;UBERON:0001015,1.26e-20,64;UBERON:0000383,1.26e-20,64;UBERON:0001134,5.56e-20,62;UBERON:0002036,5.56e-20,62;UBERON:0003082,5.56e-20,62;UBERON:0000486,1.11e-16,83;UBERON:0005256,2.91e-15,122;UBERON:0001637,3.65e-11,42;UBERON:0003509,3.65e-11,42;UBERON:0004572,3.65e-11,42;UBERON:0003104,1.44e-10,160;UBERON:0009142,1.44e-10,160;UBERON:0000490,1.75e-09,148;UBERON:0002100,2.37e-09,199;UBERON:0004573,3.19e-08,33;UBERON:0004571,3.19e-08,33;UBERON:0001310,2.78e-07,4;UBERON:0007500,3.48e-07,59;UBERON:0001981,3.48e-07,59;UBERON:0004537,3.48e-07,59;UBERON:0006965,3.48e-07,59 | |||
|phase1_expression=0.726713517082227,2.14100523890983,0.422863212287913,0,3.5756887554183,1.74467704820074,5.06599756336621,0,0.783556884599516,0.491467873003018,1.39560233594486,0,0,0.123766352960047,0.331397375727916,2.01697543935533,1.20538905604795,1.46062018077475,3.90346239032406,0.492484232307152,0.816002764977012,0.626909442956176,0.286235987131057,0.684372125364421,0.376627918784408,0,0,0,0,0,0,0,1.50602959389125,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,0,0.579386075843295,0,0.486634870302636,0.661743720148475,0.665188192387692,0.43917392846563,0.261958150995425,0,0,0,0,0,0,1.14398982156026,0,0,0.860234595106124,0,0.56530794192401,0,0.550236083880135,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,0,1.49091585508596,0.12663051166458,0.264818361626438,0.286836620748814,0.709336764396714,1.12135520028461,1.06748995729705,0.98667019366864,0,0.404132016209064,0.653847612453835,0.302714855289863,0,0,1.24864030732128,1.1409436430889,0.597794722207204,0.23486899728753,0.323745888736263,0.280901613404497,0,0.368502951935304,0.309977343527296,0,1.97813543422845,0,0.718618141816238,0.336672227908132,0.125118519871964,0.277064115484183,1.31693286264251,0.30648779579902,0.600952235626387,0.340296549480063,1.25572744982203,0.640672166455702,1.05965950579781,0.600182192168805,0.206105058476878,1.8034837803194,0.558350568994769,0.506328996723799,0.779496041289589,1.51460264546469,0.460249493211497,0.646584227275248,1.42003837006646,1.20902517873168,0.169560592310488,0,0,0.286804595389004,0.121973706129595,0.265059536642971,0.464775771478074,0.310983165046111,0.504641701751257,0.72995471815166,6.25798129319264,3.21620469096443,0,2.3218396401599,2.16563844500876,0.354920400119532,0.505754070234305,0.482022059766964,0.661763836394364,0,0,0.404493924480493,1.56977172100277,0.769494313892781,0,0,0.8231480226628,0,0,0,0,0,0,0.686271241194102,0,0,0,0.185176890317059,0.325808305310325,1.03993478527958,2.88662684050547,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0.43596006883328,0.07333828582095,0.646358578788889,0,0.845302752556,0.531876233169741,3.12022310734098,1.02882949704857,0,0.532844358032199,0.142977993658148,0.542621605391443,0.823240336780769,0.325736184293735,0,0,0.301439377059586,0.871533458600294,1.19967589418468,0,0,0,0.479249710983165,0,0,1.15825045334063,1.02738161275192,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0.36807447515742,1.00034104211935,0.813795071099207,2.49565033836969,3.56857977594324,1.41932173530541,1.63997980989798,2.10662269809403,0,0,0,3.50301420229236,0.695068915744663,0.195801157462741,2.05886054286514,0,0,0,0,0,0,0.248107807818777,1.07423381301644,2.52594084989766,0.256278298511402,0.511707249066704,2.73451665944133,0,1.3878872442239,1.59805552781814,0.246381468041427,0.519254429183621,1.16210378459959,0,0.200506470303285,0.0920809889358963,0.68888668898764,1.82091168006717,1.96686622439136,0,0,0,0,0,0,0,0.647747748306418,0,0,1.50506932156456,0,0,0.223874754722178,0,0,0,0.984043937099117,0.325378394664303,0,0.366277859273374,0,0,0,1.6068392984416,0.580024309752732,1.07834031980251,0.767518373630648,0.964856007391714,0.537101224341368,1.0151168573996,0.852266274161009,3.11612124763581,0,0,0,0,1.39453664789186,2.51849877464512,0.6970372701606,0,0.532306030317022,0,1.29726953372744,5.15249592271168,0,0.949138274156178,1.90630193923825,0.767693373934002,0.42793898803392,0.318203247925937,1.56989728039846,0.719489830333259,0,0.824686816419805,1.01091240786658,11.0957224821106,2.52755073743389,0.48763373908959,1.21856744815642,1.05650146756755,0.409499734223957,2.40389234321312,2.26016233240486,0.551365343546124,0.66343897524122,4.82295973779139,2.31510213706675,1.31178950409327,3.04365565444056,4.957175969596,2.25356482025793,0.286822704408103,0.687743287091848,1.78335525740625,0.709522128141196,0.844430541190656,0.329294892959902,0.379473173765715,0.699869440489966,0.192444225451024,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.320472213382419,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.284136146806413,0,0,0,0,0,0.333926115068718,0,0,4.38345574152353,0.552567831062295,0,0,0,2.17727711363265,0,0,0,2.95930216910801,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0.110579259931225,0,0.658156191461918,0,0,0.307801034015188,0,0,0,0,0,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,3.98104772431402,0.619202951523374,1.22206028986725,0,0,0,0,9.63093176758547,0,0,0,0,3.15667522279512,1.20990716048664,0.30607276163049,0.189559738885464,0,0,1.32930774541437,0.330991955875499,0,0,0.284609546029793,0.277349346026277,0.173559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| ||
|short_description=p7@TPM2 | |||
}} | }} |
Latest revision as of 08:18, 17 September 2015
Short description: | p7@TPM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TPM2_5end |
Coexpression cluster: | C638_skeletal_tongue_Adipocyte_diaphragm_penis_throat_Smooth |
Association with transcript: | -127bp_to_ENST00000486018_5end |
EntrezGene: | TPM2 |
HGNC: | 12011 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.27e-16 | 32 |
muscle precursor cell | 1.67e-15 | 58 |
myoblast | 1.67e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.67e-15 | 58 |
smooth muscle cell | 1.22e-14 | 43 |
smooth muscle myoblast | 1.22e-14 | 43 |
muscle cell | 1.80e-14 | 55 |
electrically responsive cell | 2.96e-12 | 61 |
electrically active cell | 2.96e-12 | 61 |
smooth muscle cell of the umbilical artery | 2.78e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 4.57e-22 | 73 |
somite | 1.88e-21 | 71 |
presomitic mesoderm | 1.88e-21 | 71 |
presumptive segmental plate | 1.88e-21 | 71 |
dermomyotome | 1.88e-21 | 71 |
trunk paraxial mesoderm | 1.88e-21 | 71 |
paraxial mesoderm | 5.44e-21 | 72 |
presumptive paraxial mesoderm | 5.44e-21 | 72 |
epithelial vesicle | 5.97e-21 | 78 |
muscle tissue | 1.26e-20 | 64 |
musculature | 1.26e-20 | 64 |
musculature of body | 1.26e-20 | 64 |
skeletal muscle tissue | 5.56e-20 | 62 |
striated muscle tissue | 5.56e-20 | 62 |
myotome | 5.56e-20 | 62 |
multilaminar epithelium | 1.11e-16 | 83 |
trunk mesenchyme | 2.91e-15 | 122 |
artery | 3.65e-11 | 42 |
arterial blood vessel | 3.65e-11 | 42 |
arterial system | 3.65e-11 | 42 |
mesenchyme | 1.44e-10 | 160 |
entire embryonic mesenchyme | 1.44e-10 | 160 |
unilaminar epithelium | 1.75e-09 | 148 |
trunk | 2.37e-09 | 199 |
systemic artery | 3.19e-08 | 33 |
systemic arterial system | 3.19e-08 | 33 |
umbilical artery | 2.78e-07 | 4 |
epithelial tube open at both ends | 3.48e-07 | 59 |
blood vessel | 3.48e-07 | 59 |
blood vasculature | 3.48e-07 | 59 |
vascular cord | 3.48e-07 | 59 |