FFCP PHASE1:Hg19::chr6:25963020..25963051,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10475 | |EntrezGene=10475 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10059 | |HGNC=10059 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000540262_5end | |association_with_transcript=0bp_to_ENST00000540262_5end | ||
|cluster_id=chr6:25963020..25963051,+ | |||
|description=CAGE_peak_1_at_TRIM38_5end | |description=CAGE_peak_1_at_TRIM38_5end | ||
|id=chr6:25963020..25963051,+ | |id=chr6:25963020..25963051,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.26e-26!140;CL:0002320!2.70e-24!365;CL:0000134!3.76e-24!358;CL:0000048!7.59e-22!430;CL:0002031!1.12e-21!124;CL:0002087!2.25e-20!119;CL:0000723!2.67e-20!436;CL:0000034!4.91e-19!444;CL:0000766!4.95e-18!76;CL:0000037!1.54e-17!172;CL:0000566!1.54e-17!172;CL:0002057!3.55e-17!42;CL:0002032!7.41e-17!165;CL:0000837!7.41e-17!165;CL:0000219!9.76e-16!390;CL:0000860!1.05e-15!45;CL:0000839!1.14e-15!70;CL:0000557!1.88e-15!71;CL:0002009!1.03e-14!65;CL:0002194!1.97e-14!63;CL:0000576!1.97e-14!63;CL:0000040!1.97e-14!63;CL:0000559!1.97e-14!63;CL:0000988!3.13e-14!182;CL:0000763!1.04e-10!112;CL:0000049!1.04e-10!112 | |ontology_enrichment_celltype=CL:0000738!3.26e-26!140;CL:0002320!2.70e-24!365;CL:0000134!3.76e-24!358;CL:0000048!7.59e-22!430;CL:0002031!1.12e-21!124;CL:0002087!2.25e-20!119;CL:0000723!2.67e-20!436;CL:0000034!4.91e-19!444;CL:0000766!4.95e-18!76;CL:0000037!1.54e-17!172;CL:0000566!1.54e-17!172;CL:0002057!3.55e-17!42;CL:0002032!7.41e-17!165;CL:0000837!7.41e-17!165;CL:0000219!9.76e-16!390;CL:0000860!1.05e-15!45;CL:0000839!1.14e-15!70;CL:0000557!1.88e-15!71;CL:0002009!1.03e-14!65;CL:0002194!1.97e-14!63;CL:0000576!1.97e-14!63;CL:0000040!1.97e-14!63;CL:0000559!1.97e-14!63;CL:0000988!3.13e-14!182;CL:0000763!1.04e-10!112;CL:0000049!1.04e-10!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.21e-14;33!CL:0002057;1.21e-14;33!CL:0000473;2.46e-12;39!CL:0000234;2.46e-12;39!CL:0000576;4.00e-10;48!CL:0000766;6.10e-09;69!CL:0002087;4.34e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.24e-27,136;CL:0002320,4.72e-25,361;CL:0000134,6.47e-25,354;CL:0000048,7.12e-23,427;CL:0002031,1.60e-22,120;CL:0000723,2.60e-21,433;CL:0002087,3.32e-21,115;CL:0000034,5.22e-20,441;CL:0000766,3.59e-19,72;CL:0000037,4.73e-18,168;CL:0002032,2.27e-17,161;CL:0000837,2.27e-17,161;CL:0000473,3.27e-17,48;CL:0000234,3.27e-17,48;CL:0000860,3.53e-17,42;CL:0002057,3.53e-17,42;CL:0000839,9.44e-17,66;CL:0000557,1.67e-16,67;CL:0000219,2.65e-16,386;CL:0002009,8.32e-16,61;CL:0002194,1.55e-15,59;CL:0000576,1.55e-15,59;CL:0000040,1.55e-15,59;CL:0000559,1.55e-15,59;CL:0000988,4.99e-15,177;CL:0000763,3.34e-11,108;CL:0000049,3.34e-11,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.47e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!8.86e-23!375;UBERON:0002390!9.65e-19!102;UBERON:0003061!9.65e-19!102;UBERON:0002193!1.01e-17!112;UBERON:0002371!1.01e-14!80;UBERON:0001474!3.95e-13!86;UBERON:0004765!3.60e-12!101;UBERON:0001434!3.60e-12!101;UBERON:0002405!2.74e-11!115;UBERON:0002204!1.53e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.71e-23,371;UBERON:0002390,1.24e-19,98;UBERON:0003061,1.24e-19,98;UBERON:0002193,1.69e-18,108;UBERON:0002371,1.27e-15,76;UBERON:0002405,2.35e-15,93;UBERON:0001474,6.67e-14,82;UBERON:0004765,7.86e-14,90;UBERON:0001434,6.61e-13,100;UBERON:0000926,1.52e-11,315;UBERON:0004120,1.52e-11,315;UBERON:0006603,1.52e-11,315;UBERON:0002204,2.41e-11,167;UBERON:0003081,2.08e-08,203 | |||
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| ||
|short_description=p1@TRIM38 | |short_description=p1@TRIM38 | ||
}} | }} |
Latest revision as of 08:11, 17 September 2015
Short description: | p1@TRIM38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM38_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000540262_5end |
EntrezGene: | TRIM38 |
HGNC: | 10059 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.24e-27 | 136 |
connective tissue cell | 4.72e-25 | 361 |
mesenchymal cell | 6.47e-25 | 354 |
multi fate stem cell | 7.12e-23 | 427 |
hematopoietic lineage restricted progenitor cell | 1.60e-22 | 120 |
somatic stem cell | 2.60e-21 | 433 |
nongranular leukocyte | 3.32e-21 | 115 |
stem cell | 5.22e-20 | 441 |
myeloid leukocyte | 3.59e-19 | 72 |
hematopoietic stem cell | 4.73e-18 | 168 |
hematopoietic oligopotent progenitor cell | 2.27e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.27e-17 | 161 |
defensive cell | 3.27e-17 | 48 |
phagocyte | 3.27e-17 | 48 |
classical monocyte | 3.53e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.53e-17 | 42 |
myeloid lineage restricted progenitor cell | 9.44e-17 | 66 |
granulocyte monocyte progenitor cell | 1.67e-16 | 67 |
motile cell | 2.65e-16 | 386 |
macrophage dendritic cell progenitor | 8.32e-16 | 61 |
monopoietic cell | 1.55e-15 | 59 |
monocyte | 1.55e-15 | 59 |
monoblast | 1.55e-15 | 59 |
promonocyte | 1.55e-15 | 59 |
hematopoietic cell | 4.99e-15 | 177 |
myeloid cell | 3.34e-11 | 108 |
common myeloid progenitor | 3.34e-11 | 108 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.71e-23 | 371 |
hematopoietic system | 1.24e-19 | 98 |
blood island | 1.24e-19 | 98 |
hemolymphoid system | 1.69e-18 | 108 |
bone marrow | 1.27e-15 | 76 |
immune system | 2.35e-15 | 93 |
bone element | 6.67e-14 | 82 |
skeletal element | 7.86e-14 | 90 |
skeletal system | 6.61e-13 | 100 |
mesoderm | 1.52e-11 | 315 |
mesoderm-derived structure | 1.52e-11 | 315 |
presumptive mesoderm | 1.52e-11 | 315 |
musculoskeletal system | 2.41e-11 | 167 |
lateral plate mesoderm | 2.08e-08 | 203 |