FFCP PHASE1:Hg19::chr15:35084709..35084723,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=70 | |EntrezGene=70 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=143 | |HGNC=143 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000560563_5end | |association_with_transcript=0bp_to_ENST00000560563_5end | ||
|cluster_id=chr15:35084709..35084723,- | |||
|coexpression_cluster_id=C352 | |||
|description=CAGE_peak_3_at_ACTC1_5end | |description=CAGE_peak_3_at_ACTC1_5end | ||
|id=chr15:35084709..35084723,- | |id=chr15:35084709..35084723,- | ||
|ontology_enrichment_celltype=CL:0000188!4.62e-10!9;CL:0002322!3.91e-08!5;CL:0000540!4.65e-07!6;CL:0000031!4.65e-07!6;CL:0000404!4.65e-07!6 | |ontology_enrichment_celltype=CL:0000188!4.62e-10!9;CL:0002322!3.91e-08!5;CL:0000540!4.65e-07!6;CL:0000031!4.65e-07!6;CL:0000404!4.65e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000188;5.44e-19;9!CL:0000680;6.31e-13;7!CL:0000515;9.71e-12;3!CL:0000056;6.60e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,5.52e-19,9;CL:0000515,6.51e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0005062;3.78e-09;4!UBERON:0007284;3.78e-09;4!CL:0000515;6.60e-09;4!UBERON:0006603;2.91e-08;65!UBERON:0006965;1.04e-07;2!UBERON:0007297;1.48e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;6.19e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.08e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.22e-08!115;UBERON:0003688!4.52e-07!6;UBERON:0002358!4.52e-07!6;UBERON:0003684!4.52e-07!6;UBERON:0001178!4.52e-07!6;UBERON:0004151!5.57e-07!3;UBERON:0003978!6.36e-07!3;UBERON:0009751!6.36e-07!3;UBERON:0000946!6.36e-07!3;UBERON:0002523!6.36e-07!3;UBERON:0005983!6.36e-07!3;UBERON:0002165!6.36e-07!3;UBERON:0002062!6.36e-07!3;UBERON:0007280!6.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.46e-35;16!UBERON:0002036;1.46e-35;16!UBERON:0002385;2.29e-19;31!UBERON:0001015;2.29e-19;31!UBERON:0000383;2.29e-19;31!UBERON:0004151;3.54e-12;3!UBERON:0003978;4.58e-12;3!UBERON:0000946;4.58e-12;3!UBERON:0007100;6.54e-11;25!UBERON:0002081;1.50e-08;2!UBERON:0000341;1.70e-08;2!UBERON:0002133;1.87e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,3.41e-12,3;UBERON:0003978,4.42e-12,3;UBERON:0009751,4.42e-12,3;UBERON:0000946,4.42e-12,3;UBERON:0002523,4.42e-12,3;UBERON:0005983,4.42e-12,3;UBERON:0002165,4.42e-12,3;UBERON:0002062,4.42e-12,3;UBERON:0007280,4.42e-12,3;UBERON:0007100,5.51e-10,27;UBERON:0003103,1.22e-08,68;UBERON:0003104,1.35e-08,160;UBERON:0009142,1.35e-08,160;UBERON:0002081,1.44e-08,2;UBERON:0010227,1.44e-08,2;UBERON:0000341,1.80e-08,2;UBERON:0002133,1.80e-08,2;UBERON:0002385,6.41e-08,64;UBERON:0001015,6.41e-08,64;UBERON:0000383,6.41e-08,64;UBERON:0007023,9.93e-08,114;UBERON:0005256,1.03e-07,122;UBERON:0001134,5.39e-07,62;UBERON:0002036,5.39e-07,62;UBERON:0003082,5.39e-07,62;UBERON:0002329,8.25e-07,71;UBERON:0003059,8.25e-07,71;UBERON:0007282,8.25e-07,71;UBERON:0004290,8.25e-07,71;UBERON:0009618,8.25e-07,71 | |||
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| ||
|short_description=p3@ACTC1 | |short_description=p3@ACTC1 | ||
}} | }} |
Latest revision as of 07:23, 17 September 2015
Short description: | p3@ACTC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ACTC1_5end |
Coexpression cluster: | C352_heart_mesenchymal_Skeletal_Pericytes_left_skeletal_Myoblast |
Association with transcript: | 0bp_to_ENST00000560563_5end |
EntrezGene: | ACTC1 |
HGNC: | 143 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 5.52e-19 | 9 |
skeletal muscle myoblast | 6.51e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 3.41e-12 | 3 |
valve | 4.42e-12 | 3 |
cardiac mesenchyme | 4.42e-12 | 3 |
cardial valve | 4.42e-12 | 3 |
tunica intima | 4.42e-12 | 3 |
heart layer | 4.42e-12 | 3 |
endocardium | 4.42e-12 | 3 |
endocardial cushion | 4.42e-12 | 3 |
presumptive endocardium | 4.42e-12 | 3 |
primary circulatory organ | 5.51e-10 | 27 |
compound organ | 1.22e-08 | 68 |
mesenchyme | 1.35e-08 | 160 |
entire embryonic mesenchyme | 1.35e-08 | 160 |
cardiac atrium | 1.44e-08 | 2 |
future cardiac atrium | 1.44e-08 | 2 |
throat | 1.80e-08 | 2 |
atrioventricular valve | 1.80e-08 | 2 |
muscle tissue | 6.41e-08 | 64 |
musculature | 6.41e-08 | 64 |
musculature of body | 6.41e-08 | 64 |
adult organism | 9.93e-08 | 114 |
trunk mesenchyme | 1.03e-07 | 122 |
skeletal muscle tissue | 5.39e-07 | 62 |
striated muscle tissue | 5.39e-07 | 62 |
myotome | 5.39e-07 | 62 |
somite | 8.25e-07 | 71 |
presomitic mesoderm | 8.25e-07 | 71 |
presumptive segmental plate | 8.25e-07 | 71 |
dermomyotome | 8.25e-07 | 71 |
trunk paraxial mesoderm | 8.25e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.08e-09 | 2 |