FFCP PHASE1:Hg19::chr5:176943608..176943623,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:176943608..176943623,- to FFCP PHASE1:Hg19::chr5:176943608..176943623,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51428 | |EntrezGene=51428 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18674 | |HGNC=18674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-283bp_to_ENST00000504781_5end | |||
|cluster_id=chr5:176943608..176943623,- | |||
|coexpression_cluster_id=C2471 | |||
|description=CAGE_peak_4_at_DDX41_5end | |||
|id=chr5:176943608..176943623,- | |||
|ontology_enrichment_celltype=CL:0000055!1.70e-14!180;CL:0000359!8.42e-13!32;CL:0000192!3.53e-12!42;CL:0000514!3.53e-12!42;CL:0000680!1.11e-11!57;CL:0000056!1.11e-11!57;CL:0000355!1.11e-11!57;CL:0000548!2.48e-11!679;CL:0000004!2.48e-11!679;CL:0000255!2.48e-11!679;CL:0000144!4.54e-11!625;CL:0000012!8.22e-11!682;CL:0000183!1.43e-10!59;CL:0000187!2.94e-10!54;CL:0000393!4.99e-10!60;CL:0000211!4.99e-10!60;CL:0002371!4.16e-09!591;CL:0000222!1.98e-08!119;CL:0000003!8.10e-07!722;CL:0002321!8.92e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.94e-17;32!CL:0000192;2.08e-11;43!CL:0002595;2.35e-08;5!CL:0000187;3.81e-07;55!CL:0002594;4.71e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.64e-18,32;CL:0000680,2.19e-14,58;CL:0000056,2.19e-14,58;CL:0000355,2.19e-14,58;CL:0000192,3.29e-14,43;CL:0000514,3.29e-14,43;CL:0000187,6.18e-12,55;CL:0000393,4.91e-10,61;CL:0000211,4.91e-10,61;CL:0002595,1.89e-08,5;CL:0000034,2.30e-08,441;CL:0000048,7.24e-08,427;CL:0000723,1.86e-07,433;CL:0000222,1.92e-07,121;CL:0002594,5.40e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;2.08e-11;43!CL:0000355;3.25e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.36e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.24e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!5.67e-11!42;UBERON:0003509!5.67e-11!42;UBERON:0004572!5.67e-11!42;UBERON:0001134!1.43e-10!61;UBERON:0002036!1.43e-10!61;UBERON:0003082!1.43e-10!61;UBERON:0000490!2.09e-10!138;UBERON:0002385!1.12e-09!63;UBERON:0001015!1.12e-09!63;UBERON:0000383!1.12e-09!63;UBERON:0004573!2.88e-09!33;UBERON:0004571!2.88e-09!33;UBERON:0001981!1.80e-08!60;UBERON:0007500!1.80e-08!60;UBERON:0004537!1.80e-08!60;UBERON:0006965!1.80e-08!60;UBERON:0004872!6.93e-08!84;UBERON:0000055!7.19e-08!69;UBERON:0003914!1.19e-07!118;UBERON:0002049!1.22e-07!79;UBERON:0007798!1.22e-07!79;UBERON:0005256!1.62e-07!143;UBERON:0004290!2.01e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.06e-10;33!UBERON:0004571;2.06e-10;33!UBERON:0001637;2.14e-09;42!UBERON:0003509;2.14e-09;42!UBERON:0004572;2.14e-09;42!UBERON:0003834;2.35e-08;5!UBERON:0001533;2.35e-08;5!UBERON:0003513;8.36e-08;7!UBERON:0001310;4.71e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.34e-15,42;UBERON:0003509,5.34e-15,42;UBERON:0004572,5.34e-15,42;UBERON:0001134,6.47e-14,62;UBERON:0002036,6.47e-14,62;UBERON:0003082,6.47e-14,62;UBERON:0002385,3.33e-13,64;UBERON:0001015,3.33e-13,64;UBERON:0000383,3.33e-13,64;UBERON:0004573,2.91e-12,33;UBERON:0004571,2.91e-12,33;UBERON:0005256,4.70e-12,122;UBERON:0002329,4.69e-11,71;UBERON:0003059,4.69e-11,71;UBERON:0007282,4.69e-11,71;UBERON:0004290,4.69e-11,71;UBERON:0009618,4.69e-11,71;UBERON:0003077,8.73e-11,72;UBERON:0007285,8.73e-11,72;UBERON:0003914,8.77e-11,117;UBERON:0007524,1.60e-10,73;UBERON:0007500,1.88e-10,59;UBERON:0001981,1.88e-10,59;UBERON:0004537,1.88e-10,59;UBERON:0006965,1.88e-10,59;UBERON:0007503,3.89e-10,78;UBERON:0000486,9.36e-10,83;UBERON:0000490,1.11e-09,148;UBERON:0004872,2.71e-09,83;UBERON:0003104,3.34e-09,160;UBERON:0009142,3.34e-09,160;UBERON:0000055,7.42e-09,68;UBERON:0003834,1.89e-08,5;UBERON:0001533,1.89e-08,5;UBERON:0003513,6.72e-08,7;UBERON:0002049,1.18e-07,78;UBERON:0007798,1.18e-07,78;UBERON:0002100,2.24e-07,199;UBERON:0001310,5.40e-07,4 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.281908808191942,1.0007329835313,0.893922188854576,0.872338524100369,2.53299878168311,1.89515962028049,0,3.44027511102112,0.697801167972428,0.436882744260345,0,0,0,0.672325146451775,0,0,0,0.369363174230364,0,1.88072832886853,0.286235987131057,0,0,1.98674854944673,1.06730766284929,1.10195093839151,0,0,0.154816123316076,0,0.90361775633475,0,0,8.38798471675787,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.566546713487831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6354931277613,0,0.50133791063589,0.144846518960824,3.9764297352555,12.1658717575659,0.0945348171640679,0,0.087834785693126,0,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0.39752481473341,0,0.694281003215189,0,0,0.275118041940067,0.626984899610432,0,0,1.00416183829401,0,0,0.732186172644509,0,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,1.28241220751285,0,0,0.436094052142534,6.46063537203914,0.506522046658319,3.70745706277013,0.860509862246441,0,1.68203280042692,5.33744978648525,2.4666754841716,0.311211035399766,0,0,0.908144565869588,0,0,0,0,0,0,0.161872944368132,0,0.408308342509787,0.122834317311768,0,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0,0.612975591598039,0.300476117813194,1.47461838108027,1.07633781413317,0.85422955527427,3.60284231971255,0.300091096084402,0.309157587715317,1.03056216018252,0.37223371266318,1.0126579934476,1.65642908774038,1.00973509697646,1.38074847963449,0.161646056818812,1.77504796258307,1.30977727695932,0.847802961552438,0.193260853163297,0.545492241181669,1.14721838155602,0.243947412259191,0.265059536642971,14.4080489158203,6.3233243559376,7.0649838245176,0.36497735907583,0,0,0,0.464367928031979,0,0.354920400119532,0.505754070234305,0,0.882351781859152,0.653638332277218,0,0.943819157121151,0.588664395376038,0.38474715694639,0.738155454624648,1.40241773803446,0,1.47008711385542,0,0,0,0.882926198829301,0,7.3774158428366,0.768251997860379,0,0,0,0,0,2.88662684050547,1.04337364477569,0.352226082707465,0.577465791044295,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0,0,0,0.16798212819886,0,0.447792613514241,0,1.15014803749563,0.492663237895943,0.176096868026452,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0.411309970813294,0,0,0.224262168690721,0,0.36669142910475,0.129271715757778,0,0,0,0,0,0,0,5.43316375900961,0,0,0.325736184293735,4.26470338491055,0,1.80863626235752,0.871533458600294,0.099972991182057,0,0,0,1.67737398844108,1.14861935834114,2.85273810081437,2.46128221334885,1.84928690295345,2.86497541183833,0.784596007954691,0,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0.49076596687656,0,0.271265023699736,2.49565033836969,1.42743191037729,0.157702415033935,0.702848489956279,5.41702979509894,0,0,1.99267679560631,2.39679919104214,0.0868836144680828,0.195801157462741,1.02943027143257,0,0,0,0,0,0.30239029332968,0.744323423456331,2.14846762603287,0.280660094433074,2.43464383585832,1.53512174720011,0.64341568457443,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0.116210378459959,0,7.01772646061497,0,0.68888668898764,0.546273504020151,1.31124414959424,0,1.92538342761037,0,0,1.16106791782163,0,0,0.215915916102139,1.54227252690289,0.541892875087706,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0.103041011647722,0.54941678891006,0.082509499920588,0.574265537996172,0,8.03419649220798,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.534192213880424,1.65284915360978,0.768760269460425,2.80747967488085,1.31505115112215,14.4102120282159,11.333244485903,8.3644472419272,4.62050370264133,2.66153015158511,4.34966496037536,7.4129687641568,4.57999637574372,0.372158369359667,0.632758849437452,0.571890581771475,0,0,5.40945521474092,13.3441268833869,0.179872457583315,0,0.353437207037059,2.42618977887979,4.75530963519025,0.842516912477962,0.48763373908959,2.19342140668156,7.39551027297288,0.682499557039929,0.565621727814851,0,7.71911480964574,5.30751180192976,1.75380354101505,1.15755106853338,0,3.04365565444056,3.0982349809975,4.50712964051586,0.286822704408103,0.491245205065606,3.21003946333125,1.41904425628239,0,0,0,0,0,0,1.08890984861323,0,1.72202149068492,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0.557409525377156,0.865615277858669,0.569134746787313,0,0,0,0.635020748171649,2.27235358192189,0,0.228234679033192,0,0,0.338583555603207,0,0.201799707191048,0,0,0.307240764308458,0,0,0,0,0,2.97501246323581,0.33307196799782,2.81974010175699,0,0,0.485442086998054,0,0,0.23874448473769,0,0,0,0,0.445234820091624,0.329607748453519,0,0.19924798825107,0,0,0,3.32328974744888,26.4383649512536,0,0,0,0.986434056369336,0,0,0,0,0,0,0.437299999980979,0,0.568967241427498,0.254253650292766,0,0,0.2916046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| ||
|short_description=p4@DDX41 | |||
}} | }} |
Latest revision as of 07:12, 17 September 2015
Short description: | p4@DDX41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DDX41_5end |
Coexpression cluster: | C2471_basal_Smooth_mucinous_Chondrocyte_H9_Cardiac_Sertoli |
Association with transcript: | -283bp_to_ENST00000504781_5end |
EntrezGene: | DDX41 |
HGNC: | 18674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.64e-18 | 32 |
muscle precursor cell | 2.19e-14 | 58 |
myoblast | 2.19e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.19e-14 | 58 |
smooth muscle cell | 3.29e-14 | 43 |
smooth muscle myoblast | 3.29e-14 | 43 |
muscle cell | 6.18e-12 | 55 |
electrically responsive cell | 4.91e-10 | 61 |
electrically active cell | 4.91e-10 | 61 |
smooth muscle cell of the subclavian artery | 1.89e-08 | 5 |
stem cell | 2.30e-08 | 441 |
multi fate stem cell | 7.24e-08 | 427 |
somatic stem cell | 1.86e-07 | 433 |
mesodermal cell | 1.92e-07 | 121 |
smooth muscle cell of the umbilical artery | 5.40e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.24e-08 | 14 |