FFCP PHASE1:Hg19::chr9:3525727..3525828,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5991 | |EntrezGene=5991 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9984 | |HGNC=9984 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGD7,E9PGD6,F6UGA0,P48380,Q5JTM2 | |UniProt=E9PGD7,E9PGD6,F6UGA0,P48380,Q5JTM2 | ||
|association_with_transcript=154bp_to_ENST00000302303,ENST00000381985,ENST00000381986,ENST00000381992,ENST00000382004,NM_002919,NM_134428,uc003zhr.2,uc003zhs.1,uc010mhd.2,uc010mhe.1_5end | |association_with_transcript=154bp_to_ENST00000302303,ENST00000381985,ENST00000381986,ENST00000381992,ENST00000382004,NM_002919,NM_134428,uc003zhr.2,uc003zhs.1,uc010mhd.2,uc010mhe.1_5end | ||
|cluster_id=chr9:3525727..3525828,- | |||
|coexpression_cluster_id=C280 | |||
|description=CAGE_peak_2_at_RFX3_5end | |description=CAGE_peak_2_at_RFX3_5end | ||
|id=chr9:3525727..3525828,- | |id=chr9:3525727..3525828,- | ||
|ontology_enrichment_celltype=CL:0000738!2.84e-31!140;CL:0002031!2.10e-25!124;CL:0002087!2.28e-24!119;CL:0000037!1.57e-23!172;CL:0000566!1.57e-23!172;CL:0002032!4.39e-21!165;CL:0000837!4.39e-21!165;CL:0000988!1.16e-20!182;CL:0002057!1.07e-18!42;CL:0000838!3.86e-16!52;CL:0000542!5.26e-16!53;CL:0000051!5.26e-16!53;CL:0000860!8.82e-16!45;CL:0000766!3.42e-13!76;CL:0000557!9.11e-11!71;CL:0000791!9.81e-11!18;CL:0000789!9.81e-11!18;CL:0002420!9.81e-11!18;CL:0002419!9.81e-11!18;CL:0000790!9.81e-11!18;CL:0000839!7.28e-10!70;CL:0000084!1.70e-09!25;CL:0000827!1.70e-09!25;CL:0002009!8.73e-09!65;CL:0002194!2.41e-08!63;CL:0000576!2.41e-08!63;CL:0000040!2.41e-08!63;CL:0000559!2.41e-08!63;CL:0000763!8.17e-08!112;CL:0000049!8.17e-08!112;CL:0000625!1.19e-07!11;CL:0000236!7.24e-07!14 | |ontology_enrichment_celltype=CL:0000738!2.84e-31!140;CL:0002031!2.10e-25!124;CL:0002087!2.28e-24!119;CL:0000037!1.57e-23!172;CL:0000566!1.57e-23!172;CL:0002032!4.39e-21!165;CL:0000837!4.39e-21!165;CL:0000988!1.16e-20!182;CL:0002057!1.07e-18!42;CL:0000838!3.86e-16!52;CL:0000542!5.26e-16!53;CL:0000051!5.26e-16!53;CL:0000860!8.82e-16!45;CL:0000766!3.42e-13!76;CL:0000557!9.11e-11!71;CL:0000791!9.81e-11!18;CL:0000789!9.81e-11!18;CL:0002420!9.81e-11!18;CL:0002419!9.81e-11!18;CL:0000790!9.81e-11!18;CL:0000839!7.28e-10!70;CL:0000084!1.70e-09!25;CL:0000827!1.70e-09!25;CL:0002009!8.73e-09!65;CL:0002194!2.41e-08!63;CL:0000576!2.41e-08!63;CL:0000040!2.41e-08!63;CL:0000559!2.41e-08!63;CL:0000763!8.17e-08!112;CL:0000049!8.17e-08!112;CL:0000625!1.19e-07!11;CL:0000236!7.24e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.03e-15;33!CL:0002057;4.03e-15;33!CL:0000576;4.12e-11;48!CL:0000791;5.16e-11;18!CL:0000789;5.16e-11;18!CL:0002419;5.16e-11;18!CL:0002087;1.23e-10;104!CL:0000542;2.40e-10;53!CL:0000084;1.55e-09;25!CL:0000473;3.49e-09;39!CL:0000234;3.49e-09;39!CL:0000766;4.52e-09;69!CL:0000625;3.85e-08;11!CL:0000738;1.07e-07;136!CL:0000236;3.40e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.35e-36,136;CL:0002031,1.08e-29,120;CL:0002087,1.40e-28,115;CL:0000037,4.00e-27,168;CL:0002032,2.09e-24,161;CL:0000837,2.09e-24,161;CL:0000988,1.05e-23,177;CL:0000860,5.37e-20,42;CL:0002057,5.37e-20,42;CL:0000766,8.99e-17,72;CL:0000838,1.19e-16,52;CL:0000542,1.63e-16,53;CL:0000051,1.63e-16,53;CL:0000473,3.27e-15,48;CL:0000234,3.27e-15,48;CL:0000557,6.33e-14,67;CL:0000839,7.82e-13,66;CL:0002009,1.33e-11,61;CL:0002194,4.29e-11,59;CL:0000576,4.29e-11,59;CL:0000040,4.29e-11,59;CL:0000559,4.29e-11,59;CL:0000791,5.69e-11,18;CL:0000789,5.69e-11,18;CL:0002420,5.69e-11,18;CL:0002419,5.69e-11,18;CL:0000790,5.69e-11,18;CL:0000763,8.39e-10,108;CL:0000049,8.39e-10,108;CL:0000084,1.78e-09,25;CL:0000827,1.78e-09,25;CL:0000625,4.11e-08,11;CL:0000236,2.85e-07,14;CL:0000945,9.09e-07,24;CL:0000826,9.09e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.07e-14;42!CL:0000790;5.16e-11;18!CL:0000051;2.40e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.68e-20!115;UBERON:0001049!1.42e-14!57;UBERON:0005068!1.42e-14!57;UBERON:0006241!1.42e-14!57;UBERON:0007135!1.42e-14!57;UBERON:0001017!2.51e-14!82;UBERON:0002390!3.10e-13!102;UBERON:0003061!3.10e-13!102;UBERON:0005743!6.82e-13!86;UBERON:0002780!8.84e-13!41;UBERON:0001890!8.84e-13!41;UBERON:0006240!8.84e-13!41;UBERON:0003080!1.54e-12!42;UBERON:0000073!1.22e-11!94;UBERON:0001016!1.22e-11!94;UBERON:0000955!2.46e-11!69;UBERON:0006238!2.46e-11!69;UBERON:0001893!3.27e-11!34;UBERON:0002020!3.88e-11!34;UBERON:0003528!3.88e-11!34;UBERON:0002616!4.48e-11!59;UBERON:0002791!5.68e-11!33;UBERON:0002193!6.21e-11!112;UBERON:0001869!1.17e-10!32;UBERON:0001474!7.64e-09!86;UBERON:0002371!1.00e-08!80;UBERON:0000956!1.56e-08!25;UBERON:0000203!1.56e-08!25;UBERON:0002619!1.76e-08!22;UBERON:0001950!1.25e-07!20;UBERON:0002346!8.51e-07!90 | |ontology_enrichment_uberon=UBERON:0007023!2.68e-20!115;UBERON:0001049!1.42e-14!57;UBERON:0005068!1.42e-14!57;UBERON:0006241!1.42e-14!57;UBERON:0007135!1.42e-14!57;UBERON:0001017!2.51e-14!82;UBERON:0002390!3.10e-13!102;UBERON:0003061!3.10e-13!102;UBERON:0005743!6.82e-13!86;UBERON:0002780!8.84e-13!41;UBERON:0001890!8.84e-13!41;UBERON:0006240!8.84e-13!41;UBERON:0003080!1.54e-12!42;UBERON:0000073!1.22e-11!94;UBERON:0001016!1.22e-11!94;UBERON:0000955!2.46e-11!69;UBERON:0006238!2.46e-11!69;UBERON:0001893!3.27e-11!34;UBERON:0002020!3.88e-11!34;UBERON:0003528!3.88e-11!34;UBERON:0002616!4.48e-11!59;UBERON:0002791!5.68e-11!33;UBERON:0002193!6.21e-11!112;UBERON:0001869!1.17e-10!32;UBERON:0001474!7.64e-09!86;UBERON:0002371!1.00e-08!80;UBERON:0000956!1.56e-08!25;UBERON:0000203!1.56e-08!25;UBERON:0002619!1.76e-08!22;UBERON:0001950!1.25e-07!20;UBERON:0002346!8.51e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.79e-10;34!UBERON:0002020;1.79e-10;34!UBERON:0001893;1.86e-10;34!UBERON:0001869;1.91e-10;32!UBERON:0002791;2.05e-10;32!UBERON:0002780;2.80e-10;41!UBERON:0001890;2.80e-10;41!UBERON:0000956;3.60e-09;25!UBERON:0000203;3.60e-09;25!UBERON:0002619;4.01e-09;22!UBERON:0000073;5.32e-09;53!UBERON:0002616;5.32e-09;53!UBERON:0001950;3.36e-08;20 | |||
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| ||
|short_description=p2@RFX3 | |short_description=p2@RFX3 | ||
}} | }} |
Latest revision as of 07:08, 17 September 2015
Short description: | p2@RFX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RFX3_5end |
Coexpression cluster: | C280_Mast_Natural_CD19_CD8_Eosinophils_CD34_CD4 |
Association with transcript: | 154bp_to_ENST00000302303, ENST00000381985, ENST00000381986, ENST00000381992, ENST00000382004, NM_002919, NM_134428, uc003zhr.2, uc003zhs.1, uc010mhd.2, uc010mhe.1_5end |
EntrezGene: | RFX3 |
HGNC: | 9984 |
UniProt: | E9PGD7E9PGD6F6UGA0P48380Q5JTM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.50e-21 | 114 |
hematopoietic system | 2.50e-16 | 98 |
blood island | 2.50e-16 | 98 |
neural tube | 7.41e-16 | 56 |
neural rod | 7.41e-16 | 56 |
future spinal cord | 7.41e-16 | 56 |
neural keel | 7.41e-16 | 56 |
central nervous system | 1.81e-15 | 81 |
regional part of nervous system | 1.66e-14 | 53 |
regional part of brain | 1.66e-14 | 53 |
nervous system | 1.02e-13 | 89 |
regional part of forebrain | 1.25e-13 | 41 |
forebrain | 1.25e-13 | 41 |
anterior neural tube | 1.25e-13 | 41 |
future forebrain | 1.25e-13 | 41 |
hemolymphoid system | 4.08e-13 | 108 |
brain | 3.08e-12 | 68 |
future brain | 3.08e-12 | 68 |
telencephalon | 6.07e-12 | 34 |
brain grey matter | 7.29e-12 | 34 |
gray matter | 7.29e-12 | 34 |
bone marrow | 1.07e-11 | 76 |
bone element | 1.26e-11 | 82 |
cerebral hemisphere | 2.39e-11 | 32 |
regional part of telencephalon | 3.24e-11 | 32 |
skeletal element | 9.55e-10 | 90 |
immune system | 1.33e-09 | 93 |
cerebral cortex | 4.62e-09 | 25 |
pallium | 4.62e-09 | 25 |
regional part of cerebral cortex | 5.24e-09 | 22 |
neurectoderm | 1.16e-08 | 86 |
neural plate | 1.36e-08 | 82 |
presumptive neural plate | 1.36e-08 | 82 |
neocortex | 4.31e-08 | 20 |
skeletal system | 2.06e-07 | 100 |