FFCP PHASE1:Hg19::chr15:34394292..34394326,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:34394292..34394326,+ to FFCP PHASE1:Hg19::chr15:34394292..34394326,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=161779 | |EntrezGene=161779 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19401 | |HGNC=19401 | ||
|TSSclassifier=strong | |||
|UniProt=Q96DM1 | |UniProt=Q96DM1 | ||
|association_with_transcript=18bp_to_ENST00000397766,NM_152595,uc001zho.2_5end | |||
|cluster_id=chr15:34394292..34394326,+ | |||
|coexpression_cluster_id=C443 | |||
|description=CAGE_peak_1_at_PGBD4_5end | |||
|id=chr15:34394292..34394326,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.19e-30!140;CL:0000037!3.84e-28!172;CL:0000566!3.84e-28!172;CL:0000988!8.73e-27!182;CL:0002032!4.60e-25!165;CL:0000837!4.60e-25!165;CL:0000542!1.81e-22!53;CL:0000051!1.81e-22!53;CL:0000838!4.44e-22!52;CL:0002031!1.84e-21!124;CL:0002087!1.28e-20!119;CL:0000945!4.50e-11!24;CL:0000826!4.50e-11!24;CL:0000791!6.40e-11!18;CL:0000789!6.40e-11!18;CL:0002420!6.40e-11!18;CL:0002419!6.40e-11!18;CL:0000790!6.40e-11!18;CL:0000084!2.28e-10!25;CL:0000827!2.28e-10!25;CL:0000236!2.52e-08!14;CL:0000763!1.39e-07!112;CL:0000049!1.39e-07!112;CL:0000625!3.91e-07!11;CL:0000134!6.38e-07!358;CL:0000766!8.96e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.91e-14;53!CL:0000084;1.64e-12;25!CL:0000791;1.75e-12;18!CL:0000789;1.75e-12;18!CL:0002419;1.75e-12;18!CL:0000945;7.91e-12;24!CL:0000236;6.96e-09;13!CL:0000738;6.51e-08;136!CL:0000625;7.11e-08;11!CL:0002087;1.63e-07;104!CL:0000094;9.30e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.46e-36,136;CL:0000037,3.87e-31,168;CL:0000988,5.60e-30,177;CL:0002032,1.34e-27,161;CL:0000837,1.34e-27,161;CL:0000542,8.09e-26,53;CL:0000051,8.09e-26,53;CL:0000838,2.30e-25,52;CL:0002031,2.46e-25,120;CL:0002087,1.06e-24,115;CL:0000791,1.81e-12,18;CL:0000789,1.81e-12,18;CL:0002420,1.81e-12,18;CL:0002419,1.81e-12,18;CL:0000790,1.81e-12,18;CL:0000945,3.40e-12,24;CL:0000826,3.40e-12,24;CL:0000084,3.80e-12,25;CL:0000827,3.80e-12,25;CL:0000236,1.90e-09,14;CL:0000766,3.52e-08,72;CL:0000625,4.63e-08,11;CL:0000134,5.16e-08,354;CL:0000763,9.92e-08,108;CL:0000049,9.92e-08,108;CL:0002320,1.97e-07,361;CL:0002393,3.44e-07,9;CL:0002397,3.44e-07,9;CL:0000094,7.98e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000051;1.91e-14;53!CL:0000790;1.75e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!2.48e-09!41;UBERON:0001890!2.48e-09!41;UBERON:0006240!2.48e-09!41;UBERON:0001049!8.02e-09!57;UBERON:0005068!8.02e-09!57;UBERON:0006241!8.02e-09!57;UBERON:0007135!8.02e-09!57;UBERON:0000955!1.27e-08!69;UBERON:0006238!1.27e-08!69;UBERON:0002616!1.32e-08!59;UBERON:0003080!1.48e-08!42;UBERON:0002390!7.14e-08!102;UBERON:0003061!7.14e-08!102;UBERON:0007023!9.82e-08!115;UBERON:0001017!1.21e-07!82;UBERON:0001893!2.42e-07!34;UBERON:0002020!3.08e-07!34;UBERON:0003528!3.08e-07!34;UBERON:0005743!4.04e-07!86;UBERON:0002791!5.88e-07!33;UBERON:0001869!6.68e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.21e-07;41!UBERON:0001890;1.21e-07;41!UBERON:0001893;2.19e-07;34!UBERON:0002619;5.42e-07;22!UBERON:0001869;5.72e-07;32!UBERON:0002791;7.54e-07;32!UBERON:0003528;7.66e-07;34!UBERON:0002020;7.66e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.37e-11,56;UBERON:0005068,2.37e-11,56;UBERON:0006241,2.37e-11,56;UBERON:0007135,2.37e-11,56;UBERON:0000073,7.86e-11,53;UBERON:0002616,7.86e-11,53;UBERON:0002780,1.82e-10,41;UBERON:0001890,1.82e-10,41;UBERON:0003080,1.82e-10,41;UBERON:0006240,1.82e-10,41;UBERON:0000955,3.06e-10,68;UBERON:0006238,3.06e-10,68;UBERON:0002390,3.98e-10,98;UBERON:0003061,3.98e-10,98;UBERON:0001017,5.62e-09,81;UBERON:0001016,2.52e-08,89;UBERON:0001893,3.69e-08,34;UBERON:0002193,3.76e-08,108;UBERON:0003528,4.87e-08,34;UBERON:0002020,4.87e-08,34;UBERON:0001869,1.20e-07,32;UBERON:0002791,1.73e-07,32;UBERON:0002619,5.53e-07,22 | |||
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| ||
|short_description=p1@PGBD4 | |||
}} | }} |
Latest revision as of 06:18, 17 September 2015
Short description: | p1@PGBD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGBD4_5end |
Coexpression cluster: | C443_CD4_CD8_Natural_Eosinophils_Neutrophils_Peripheral_blood |
Association with transcript: | 18bp_to_ENST00000397766, NM_152595, uc001zho.2_5end |
EntrezGene: | PGBD4 |
HGNC: | 19401 |
UniProt: | Q96DM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.46e-36 | 136 |
hematopoietic stem cell | 3.87e-31 | 168 |
hematopoietic cell | 5.60e-30 | 177 |
hematopoietic oligopotent progenitor cell | 1.34e-27 | 161 |
hematopoietic multipotent progenitor cell | 1.34e-27 | 161 |
lymphocyte | 8.09e-26 | 53 |
common lymphoid progenitor | 8.09e-26 | 53 |
lymphoid lineage restricted progenitor cell | 2.30e-25 | 52 |
hematopoietic lineage restricted progenitor cell | 2.46e-25 | 120 |
nongranular leukocyte | 1.06e-24 | 115 |
mature alpha-beta T cell | 1.81e-12 | 18 |
alpha-beta T cell | 1.81e-12 | 18 |
immature T cell | 1.81e-12 | 18 |
mature T cell | 1.81e-12 | 18 |
immature alpha-beta T cell | 1.81e-12 | 18 |
lymphocyte of B lineage | 3.40e-12 | 24 |
pro-B cell | 3.40e-12 | 24 |
T cell | 3.80e-12 | 25 |
pro-T cell | 3.80e-12 | 25 |
B cell | 1.90e-09 | 14 |
myeloid leukocyte | 3.52e-08 | 72 |
CD8-positive, alpha-beta T cell | 4.63e-08 | 11 |
mesenchymal cell | 5.16e-08 | 354 |
myeloid cell | 9.92e-08 | 108 |
common myeloid progenitor | 9.92e-08 | 108 |
connective tissue cell | 1.97e-07 | 361 |
intermediate monocyte | 3.44e-07 | 9 |
CD14-positive, CD16-positive monocyte | 3.44e-07 | 9 |
granulocyte | 7.98e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.37e-11 | 56 |
neural rod | 2.37e-11 | 56 |
future spinal cord | 2.37e-11 | 56 |
neural keel | 2.37e-11 | 56 |
regional part of nervous system | 7.86e-11 | 53 |
regional part of brain | 7.86e-11 | 53 |
regional part of forebrain | 1.82e-10 | 41 |
forebrain | 1.82e-10 | 41 |
anterior neural tube | 1.82e-10 | 41 |
future forebrain | 1.82e-10 | 41 |
brain | 3.06e-10 | 68 |
future brain | 3.06e-10 | 68 |
hematopoietic system | 3.98e-10 | 98 |
blood island | 3.98e-10 | 98 |
central nervous system | 5.62e-09 | 81 |
nervous system | 2.52e-08 | 89 |
telencephalon | 3.69e-08 | 34 |
hemolymphoid system | 3.76e-08 | 108 |
brain grey matter | 4.87e-08 | 34 |
gray matter | 4.87e-08 | 34 |
cerebral hemisphere | 1.20e-07 | 32 |
regional part of telencephalon | 1.73e-07 | 32 |
regional part of cerebral cortex | 5.53e-07 | 22 |