FFCP PHASE1:Hg19::chr11:20140627..20140631,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:20140627..20140631,+
|short_description=p3@NAV2
|description=CAGE_peak_3_at_NAV2_5end
|association_with_transcript=-387bp_to_BC107690_5end
|EntrezGene=89...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=89797 | |EntrezGene=89797 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=15997 | |HGNC=15997 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-387bp_to_BC107690_5end | |||
|cluster_id=chr11:20140627..20140631,+ | |||
|description=CAGE_peak_3_at_NAV2_5end | |||
|id=chr11:20140627..20140631,+ | |||
|ontology_enrichment_celltype=CL:0002321!4.88e-17!248;CL:0000220!7.90e-17!246;CL:0000055!1.62e-14!180;CL:0000066!4.65e-13!254;CL:0000222!7.56e-09!119;CL:0000133!5.74e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000147;9.34e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.83e-15,250;CL:0000066,3.49e-09,253;CL:0000222,1.26e-08,121;CL:0000133,5.13e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.03e-17!312;UBERON:0000483!7.37e-17!309;UBERON:0000475!1.15e-16!365;UBERON:0000477!2.27e-16!286;UBERON:0000481!5.11e-16!347;UBERON:0004111!1.72e-14!241;UBERON:0000468!1.04e-12!659;UBERON:0000064!6.92e-12!219;UBERON:0000025!1.32e-11!194;UBERON:0003914!1.67e-10!118;UBERON:0000467!2.28e-10!625;UBERON:0005256!3.91e-10!143;UBERON:0000480!3.94e-10!626;UBERON:0002100!2.65e-09!216;UBERON:0000922!5.64e-09!612;UBERON:0004121!3.91e-08!169;UBERON:0002050!4.26e-08!605;UBERON:0005423!4.26e-08!605;UBERON:0003104!5.99e-08!238;UBERON:0009142!5.99e-08!238;UBERON:0000923!6.51e-08!604;UBERON:0005291!6.51e-08!604;UBERON:0006598!6.51e-08!604;UBERON:0002532!6.51e-08!604;UBERON:0000490!1.47e-07!138;UBERON:0002049!2.22e-07!79;UBERON:0007798!2.22e-07!79;UBERON:0000924!4.81e-07!173;UBERON:0006601!4.81e-07!173;UBERON:0000466!8.68e-07!126;UBERON:0000058!9.20e-07!26 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.44e-13,309;UBERON:0000483,4.82e-13,306;UBERON:0004111,6.57e-11,240;UBERON:0000025,2.40e-09,192;UBERON:0003914,8.21e-09,117;UBERON:0000922,8.95e-09,592;UBERON:0005423,1.44e-08,581;UBERON:0002050,1.08e-07,564;UBERON:0003104,1.09e-07,160;UBERON:0009142,1.09e-07,160;UBERON:0000923,1.51e-07,560;UBERON:0010316,1.51e-07,560;UBERON:0005291,1.51e-07,560;UBERON:0006598,1.51e-07,560;UBERON:0010317,1.51e-07,560;UBERON:0002532,1.51e-07,560 | |||
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|phase1_expression=2.72517568905835,6.42301571672949,4.93340414335899,10.007329835313,5.81049422755474,11.3404008133048,0,3.15859936713415,2.08948502559871,2.94880723801811,6.28021051175185,3.27662058195258,5.53910654279752,5.69325223616215,3.31397375727916,4.70627602516243,5.42425075221579,3.65155045193687,2.92759679274304,3.93987385845721,3.87601313364081,3.13454721478088,5.72471974262113,5.33810257784248,3.13856598987007,0.61130724598361,0.164201178899891,0.157421562627358,0,0,0,1.83884244895785,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,1.1384259382189,0,0.382273228125229,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0.294605907474837,0,0,0,0.130059347559878,0,0,0.289803085735052,0.296573126324121,0,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,1.15076305659177,5.06014813338393,1.00267582127178,3.76600949298142,0.795285947051099,2.43317435151318,2.74150969775797,4.65631734671384,1.84453049955565,0.72038491523742,0.728590576585084,3.33705998505986,0,0,0,0,0,0,3.7764857399674,0,1.73570250803797,0.56530794192401,5.03399323451887,4.40188867104108,2.92592953151535,5.68516870172524,3.5576626268671,0.33472061276467,7.25092770796465,6.84244895146661,4.14905497831888,2.94130464276695,5.67099363517232,1.25019619597712,1.12264686313085,1.0135033243499,0,0,2.19842092716489,0,0,0.436094052142534,1.49091585508596,4.30543739659571,2.38336525463794,4.30254931123221,3.54668382198357,0.560677600142307,3.20246987189115,2.71334303258876,0.622422070799533,4.04132016209064,5.23078089963068,0.908144565869588,0,1.17160715916898,3.1216007683032,2.2818872861778,6.12739590262384,1.87895197830024,2.26622122115384,3.23036855415172,4.49139176760765,4.66770405784718,2.58314452939414,2.37600571456411,2.22540236350701,0,0.718618141816238,5.38675564653012,1.37630371859161,0.554128230968366,0.438977620880838,1.83892677479412,1.05166641234618,2.04177929688038,4.30535125653269,0.427114777637135,1.05965950579781,1.50045548042201,0.618315175430633,1.03056216018252,0.744467425326359,3.54430297706659,0.974370051611986,2.01947019395292,0.460249493211497,1.93975268182574,1.42003837006646,1.10827308050404,4.0694542154517,1.35282597214308,0.545492241181669,0.573609190778008,1.46368447355514,2.12047629314376,3.36962434321603,2.28054321033815,5.04641701751257,6.56959246336494,0,0,1.38134921352481,3.25057549622385,0,2.83936320095625,2.86593973132773,2.41011029883482,2.97793726377464,2.61455332910887,2.13543557199987,1.75280700608214,2.5508790466295,1.92373578473195,0.738155454624648,2.80483547606892,1.2347220339942,4.41026134156626,3.80265104465493,6.87979051674338,0.590789906681404,0,0.983907508344908,1.20097467208968,1.31700342490351,1.1240175325762,0,3.14800713539001,5.53874119027552,7.27954349695705,2.88662684050547,7.07175470347969,0.821860859650752,3.89789408954899,6.94478268864916,7.80042024161853,0.790204397959275,0,0,0,0.148631162288728,0,1.17587489739202,1.55952606966625,6.62733068001077,1.74380363108377,0,0,0,0,0,0,7.1752620550151,1.52795370223311,5.86087236050235,3.4214489204541,2.67351481028641,17.7202404127911,4.0015700568281,1.79409734952577,3.92364061949952,1.98013371716565,1.29271715757778,3.57656445851882,2.535908257668,1.59562869950922,0,3.60090323966999,2.83698264046557,2.39779961114489,0.714889968290738,1.08524321078289,1.64648067356154,2.93162565864362,1.42156779497018,2.37585561880029,1.20575750823834,0.871533458600294,0.699810938274399,0,0,0,1.19812427745791,2.29723871668228,0,7.52862794671412,10.6847687726199,1.96967059563885,0.336255431980582,0,0,0,0,1.30139853857622,3.86644406388848,3.85287410269002,5.10351001322531,0,0,0,2.57652132610194,9.50323990013386,4.88277042659524,9.15071790735551,2.49800584316026,2.36553622550902,0.702848489956279,0.300946099727719,0,3.10419213877515,1.99267679560631,0.368738337083406,2.60650843404249,3.13281851940385,3.77457766191941,0,0,0,1.21251028578504,4.99306318531491,3.93107381328584,1.24053903909388,4.29693525206575,2.52594084989766,2.30650468660262,0.511707249066704,1.93024705372329,5.93672265779964,2.7757744884478,0.710246901252508,0.739144404124282,1.03850885836724,2.78904908303902,0.604297247958111,3.20810352485256,0.920809889358963,1.60740227430449,5.09855270418808,1.18011973463482,5.86559496779635,5.54510427151786,0.784349769176855,1.46139224653261,3.58875538235777,1.13733384070897,5.10281115829547,2.59099099322567,1.54227252690289,1.62567862526312,2.50844886927427,6.11703055308092,1.66215201785745,3.35812132083267,0,0,4.10320200186223,10.1684540166909,3.90454073597164,1.13345112812495,0,0,0,1.30012049207304,3.21367859688319,1.16004861950546,3.23502095940753,2.76306614507033,3.58375088459779,1.07420244868274,1.59518363305651,2.64202544989913,2.04773681987496,3.47098322258054,2.88285101047659,1.53135254993501,2.73126008309985,3.71876439437829,0.94443704049192,0.6970372701606,1.23213432070436,2.12922412126809,1.7398659841501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| ||
|short_description=p3@NAV2 | |||
}} | }} |
Latest revision as of 05:57, 17 September 2015
Short description: | p3@NAV2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NAV2_5end |
Coexpression cluster: | NA |
Association with transcript: | -387bp_to_BC107690_5end |
EntrezGene: | NAV2 |
HGNC: | 15997 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.83e-15 | 250 |
epithelial cell | 3.49e-09 | 253 |
mesodermal cell | 1.26e-08 | 121 |
neurectodermal cell | 5.13e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.44e-13 | 309 |
epithelium | 4.82e-13 | 306 |
anatomical conduit | 6.57e-11 | 240 |
tube | 2.40e-09 | 192 |
epithelial tube | 8.21e-09 | 117 |
embryo | 8.95e-09 | 592 |
developing anatomical structure | 1.44e-08 | 581 |
embryonic structure | 1.08e-07 | 564 |
mesenchyme | 1.09e-07 | 160 |
entire embryonic mesenchyme | 1.09e-07 | 160 |
germ layer | 1.51e-07 | 560 |
germ layer / neural crest | 1.51e-07 | 560 |
embryonic tissue | 1.51e-07 | 560 |
presumptive structure | 1.51e-07 | 560 |
germ layer / neural crest derived structure | 1.51e-07 | 560 |
epiblast (generic) | 1.51e-07 | 560 |