FFCP PHASE1:Hg19::chr11:1968548..1968589,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:1968548..1968589,+
|short_description=p1@MRPL23
|description=CAGE_peak_1_at_MRPL23_5end
|association_with_transcript=0bp_to_ENST00000381514,ENST0000039729...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6150 | |EntrezGene=6150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10322 | |HGNC=10322 | ||
|UniProt=A6NJD9, | |TSSclassifier=strong | ||
|UniProt=A6NJD9,A8MVT4,A8MYK1 | |||
|association_with_transcript=0bp_to_ENST00000381514,ENST00000397294,ENST00000397297_5end | |||
|cluster_id=chr11:1968548..1968589,+ | |||
|coexpression_cluster_id=C685 | |||
|description=CAGE_peak_1_at_MRPL23_5end | |||
|id=chr11:1968548..1968589,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.03e-31!682;CL:0000144!1.10e-30!625;CL:0000548!3.33e-30!679;CL:0000004!3.33e-30!679;CL:0000255!3.33e-30!679;CL:0002371!5.79e-29!591;CL:0000003!4.17e-25!722;CL:0000183!1.54e-15!59;CL:0000055!1.15e-14!180;CL:0000187!3.11e-13!54;CL:0000192!7.39e-13!42;CL:0000514!7.39e-13!42;CL:0000393!1.63e-12!60;CL:0000211!1.63e-12!60;CL:0000680!2.09e-12!57;CL:0000056!2.09e-12!57;CL:0000355!2.09e-12!57;CL:0000220!2.21e-12!246;CL:0000222!2.40e-12!119;CL:0002321!2.52e-12!248;CL:0000034!4.56e-12!444;CL:0000723!2.30e-11!436;CL:0000048!7.68e-11!430;CL:0000359!7.52e-10!32;CL:0000063!5.25e-09!578 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.20e-09;32!CL:0000192;9.06e-09;43!CL:0000187;1.02e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,9.48e-13,55;CL:0000034,1.14e-12,441;CL:0002321,2.28e-12,250;CL:0000222,2.55e-12,121;CL:0000192,2.71e-12,43;CL:0000514,2.71e-12,43;CL:0000393,4.40e-12,61;CL:0000211,4.40e-12,61;CL:0000680,5.80e-12,58;CL:0000056,5.80e-12,58;CL:0000355,5.80e-12,58;CL:0000723,6.00e-12,433;CL:0000048,2.06e-11,427;CL:0000359,7.52e-10,32 | |||
|ontology_enrichment_development_v019=CL:0000514;9.06e-09;43!CL:0000355;9.45e-07;58 | |||
|ontology_enrichment_disease=DOID:2531!1.04e-07!51;DOID:0060083!1.04e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.04e-07,51;DOID:0060083,1.04e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.29e-14!83;UBERON:0002329!1.29e-14!83;UBERON:0003077!1.29e-14!83;UBERON:0003059!1.29e-14!83;UBERON:0007282!1.29e-14!83;UBERON:0009618!1.29e-14!83;UBERON:0007285!1.29e-14!83;UBERON:0004290!2.31e-14!70;UBERON:0000486!5.97e-13!82;UBERON:0001134!7.40e-11!61;UBERON:0002036!7.40e-11!61;UBERON:0003082!7.40e-11!61;UBERON:0005256!4.05e-10!143;UBERON:0002385!1.11e-09!63;UBERON:0001015!1.11e-09!63;UBERON:0000383!1.11e-09!63;UBERON:0001637!3.08e-08!42;UBERON:0003509!3.08e-08!42;UBERON:0004572!3.08e-08!42;UBERON:0003914!3.45e-08!118;UBERON:0000490!1.09e-07!138;UBERON:0003104!2.30e-07!238;UBERON:0009142!2.30e-07!238;UBERON:0001981!4.85e-07!60;UBERON:0007500!4.85e-07!60;UBERON:0004537!4.85e-07!60;UBERON:0006965!4.85e-07!60;UBERON:0002049!5.15e-07!79;UBERON:0007798!5.15e-07!79;UBERON:0004872!7.90e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.56e-16,78;UBERON:0002329,6.24e-14,71;UBERON:0003059,6.24e-14,71;UBERON:0007282,6.24e-14,71;UBERON:0004290,6.24e-14,71;UBERON:0009618,6.24e-14,71;UBERON:0007524,2.62e-13,73;UBERON:0003077,3.20e-13,72;UBERON:0007285,3.20e-13,72;UBERON:0000486,1.36e-12,83;UBERON:0001134,1.78e-10,62;UBERON:0002036,1.78e-10,62;UBERON:0003082,1.78e-10,62;UBERON:0000490,5.86e-10,148;UBERON:0002385,2.44e-09,64;UBERON:0001015,2.44e-09,64;UBERON:0000383,2.44e-09,64;UBERON:0003914,2.14e-08,117;UBERON:0001637,3.08e-08,42;UBERON:0003509,3.08e-08,42;UBERON:0004572,3.08e-08,42;UBERON:0003104,1.01e-07,160;UBERON:0009142,1.01e-07,160;UBERON:0005256,1.03e-07,122;UBERON:0007500,2.48e-07,59;UBERON:0001981,2.48e-07,59;UBERON:0004537,2.48e-07,59;UBERON:0006965,2.48e-07,59;UBERON:0002049,2.95e-07,78;UBERON:0007798,2.95e-07,78;UBERON:0004872,4.66e-07,83 | |||
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| ||
|short_description=p1@MRPL23 | |||
}} | }} |
Latest revision as of 05:13, 17 September 2015
Short description: | p1@MRPL23 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MRPL23_5end |
Coexpression cluster: | C685_Alveolar_Mesenchymal_Renal_Smooth_Hepatic_Fibroblast_Keratocytes |
Association with transcript: | 0bp_to_ENST00000381514, ENST00000397294, ENST00000397297_5end |
EntrezGene: | MRPL23 |
HGNC: | 10322 |
UniProt: | A6NJD9A8MVT4A8MYK1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 9.48e-13 | 55 |
stem cell | 1.14e-12 | 441 |
embryonic cell | 2.28e-12 | 250 |
mesodermal cell | 2.55e-12 | 121 |
smooth muscle cell | 2.71e-12 | 43 |
smooth muscle myoblast | 2.71e-12 | 43 |
electrically responsive cell | 4.40e-12 | 61 |
electrically active cell | 4.40e-12 | 61 |
muscle precursor cell | 5.80e-12 | 58 |
myoblast | 5.80e-12 | 58 |
multi-potent skeletal muscle stem cell | 5.80e-12 | 58 |
somatic stem cell | 6.00e-12 | 433 |
multi fate stem cell | 2.06e-11 | 427 |
vascular associated smooth muscle cell | 7.52e-10 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.56e-16 | 78 |
somite | 6.24e-14 | 71 |
presomitic mesoderm | 6.24e-14 | 71 |
presumptive segmental plate | 6.24e-14 | 71 |
dermomyotome | 6.24e-14 | 71 |
trunk paraxial mesoderm | 6.24e-14 | 71 |
dense mesenchyme tissue | 2.62e-13 | 73 |
paraxial mesoderm | 3.20e-13 | 72 |
presumptive paraxial mesoderm | 3.20e-13 | 72 |
multilaminar epithelium | 1.36e-12 | 83 |
skeletal muscle tissue | 1.78e-10 | 62 |
striated muscle tissue | 1.78e-10 | 62 |
myotome | 1.78e-10 | 62 |
unilaminar epithelium | 5.86e-10 | 148 |
muscle tissue | 2.44e-09 | 64 |
musculature | 2.44e-09 | 64 |
musculature of body | 2.44e-09 | 64 |
epithelial tube | 2.14e-08 | 117 |
artery | 3.08e-08 | 42 |
arterial blood vessel | 3.08e-08 | 42 |
arterial system | 3.08e-08 | 42 |
mesenchyme | 1.01e-07 | 160 |
entire embryonic mesenchyme | 1.01e-07 | 160 |
trunk mesenchyme | 1.03e-07 | 122 |
epithelial tube open at both ends | 2.48e-07 | 59 |
blood vessel | 2.48e-07 | 59 |
blood vasculature | 2.48e-07 | 59 |
vascular cord | 2.48e-07 | 59 |
vasculature | 2.95e-07 | 78 |
vascular system | 2.95e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 4.66e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.04e-07 | 51 |
immune system cancer | 1.04e-07 | 51 |