FFCP PHASE1:Hg19::chr12:125399192..125399198,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7316 | |EntrezGene=7316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12468 | |HGNC=12468 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4D8,F5H7Y5,F5H041 | |UniProt=F5H4D8,F5H7Y5,F5H041 | ||
|association_with_transcript=0bp_to_ENST00000536834,ENST00000544656,ENST00000546120_5end | |association_with_transcript=0bp_to_ENST00000536834,ENST00000544656,ENST00000546120_5end | ||
|cluster_id=chr12:125399192..125399198,- | |||
|description=CAGE_peak_1_at_UBC_5end | |description=CAGE_peak_1_at_UBC_5end | ||
|id=chr12:125399192..125399198,- | |id=chr12:125399192..125399198,- | ||
|ontology_enrichment_celltype=CL:0002057!6.94e-16!42;CL:0000766!2.64e-14!76;CL:0000860!6.65e-13!45;CL:0002009!4.38e-12!65;CL:0002194!2.91e-11!63;CL:0000576!2.91e-11!63;CL:0000040!2.91e-11!63;CL:0000559!2.91e-11!63;CL:0000557!5.55e-11!71;CL:0000839!3.61e-10!70;CL:0000738!8.34e-08!140 | |ontology_enrichment_celltype=CL:0002057!6.94e-16!42;CL:0000766!2.64e-14!76;CL:0000860!6.65e-13!45;CL:0002009!4.38e-12!65;CL:0002194!2.91e-11!63;CL:0000576!2.91e-11!63;CL:0000040!2.91e-11!63;CL:0000559!2.91e-11!63;CL:0000557!5.55e-11!71;CL:0000839!3.61e-10!70;CL:0000738!8.34e-08!140 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.78e-11;33!CL:0002057;8.78e-11;33!CL:0000473;4.70e-10;39!CL:0000234;4.70e-10;39!CL:0000576;8.88e-09;48!CL:0000766;3.92e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,9.31e-17,48;CL:0000234,9.31e-17,48;CL:0000766,1.63e-16,72;CL:0000860,6.94e-16,42;CL:0002057,6.94e-16,42;CL:0002009,2.86e-14,61;CL:0002194,2.19e-13,59;CL:0000576,2.19e-13,59;CL:0000040,2.19e-13,59;CL:0000559,2.19e-13,59;CL:0000557,6.67e-13,67;CL:0000839,5.26e-12,66;CL:0000738,8.52e-09,136 | |||
|ontology_enrichment_development_v019=CL:0002057;2.82e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.91e-10!80;UBERON:0002204!3.27e-09!167;UBERON:0002390!5.68e-08!102;UBERON:0003061!5.68e-08!102;UBERON:0003081!8.75e-08!216;UBERON:0001474!1.27e-07!86;UBERON:0002193!3.61e-07!112;UBERON:0004765!4.16e-07!101;UBERON:0001434!4.16e-07!101;UBERON:0000926!4.44e-07!448;UBERON:0004120!4.44e-07!448;UBERON:0006603!4.44e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.34e-11,76;UBERON:0000926,2.63e-11,315;UBERON:0004120,2.63e-11,315;UBERON:0006603,2.63e-11,315;UBERON:0003081,1.21e-10,203;UBERON:0002204,3.02e-10,167;UBERON:0004765,4.52e-10,90;UBERON:0002390,3.48e-09,98;UBERON:0003061,3.48e-09,98;UBERON:0001474,6.23e-09,82;UBERON:0002405,1.16e-08,93;UBERON:0002193,3.11e-08,108;UBERON:0001434,3.20e-08,100 | |||
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459239,866.176066203335 | ||
|short_description=p1@UBC | |short_description=p1@UBC | ||
}} | }} |
Latest revision as of 04:49, 17 September 2015
Short description: | p1@UBC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000536834, ENST00000544656, ENST00000546120_5end |
EntrezGene: | UBC |
HGNC: | 12468 |
UniProt: | F5H4D8F5H7Y5F5H041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 9.31e-17 | 48 |
phagocyte | 9.31e-17 | 48 |
myeloid leukocyte | 1.63e-16 | 72 |
classical monocyte | 6.94e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.94e-16 | 42 |
macrophage dendritic cell progenitor | 2.86e-14 | 61 |
monopoietic cell | 2.19e-13 | 59 |
monocyte | 2.19e-13 | 59 |
monoblast | 2.19e-13 | 59 |
promonocyte | 2.19e-13 | 59 |
granulocyte monocyte progenitor cell | 6.67e-13 | 67 |
myeloid lineage restricted progenitor cell | 5.26e-12 | 66 |
leukocyte | 8.52e-09 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.34e-11 | 76 |
mesoderm | 2.63e-11 | 315 |
mesoderm-derived structure | 2.63e-11 | 315 |
presumptive mesoderm | 2.63e-11 | 315 |
lateral plate mesoderm | 1.21e-10 | 203 |
musculoskeletal system | 3.02e-10 | 167 |
skeletal element | 4.52e-10 | 90 |
hematopoietic system | 3.48e-09 | 98 |
blood island | 3.48e-09 | 98 |
bone element | 6.23e-09 | 82 |
immune system | 1.16e-08 | 93 |
hemolymphoid system | 3.11e-08 | 108 |
skeletal system | 3.20e-08 | 100 |