FFCP PHASE1:Hg19::chr5:175964920..175964937,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22838 | |EntrezGene=22838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19180 | |HGNC=19180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-39bp_to_ENST00000504434_5end | |association_with_transcript=-39bp_to_ENST00000504434_5end | ||
|cluster_id=chr5:175964920..175964937,- | |||
|description=CAGE_peak_5_at_RNF44_5end | |description=CAGE_peak_5_at_RNF44_5end | ||
|id=chr5:175964920..175964937,- | |id=chr5:175964920..175964937,- | ||
|ontology_enrichment_celltype=CL:0000738!5.40e-14!140;CL:0002087!5.76e-13!119;CL:0000988!2.26e-12!182;CL:0000037!4.39e-12!172;CL:0000566!4.39e-12!172;CL:0002032!1.46e-11!165;CL:0000837!1.46e-11!165;CL:0002031!1.28e-10!124;CL:0000838!3.05e-10!52;CL:0000542!4.09e-10!53;CL:0000051!4.09e-10!53;CL:0000791!3.56e-08!18;CL:0000789!3.56e-08!18;CL:0002420!3.56e-08!18;CL:0002419!3.56e-08!18;CL:0000790!3.56e-08!18;CL:0000860!1.01e-07!45;CL:0002057!1.34e-07!42 | |ontology_enrichment_celltype=CL:0000738!5.40e-14!140;CL:0002087!5.76e-13!119;CL:0000988!2.26e-12!182;CL:0000037!4.39e-12!172;CL:0000566!4.39e-12!172;CL:0002032!1.46e-11!165;CL:0000837!1.46e-11!165;CL:0002031!1.28e-10!124;CL:0000838!3.05e-10!52;CL:0000542!4.09e-10!53;CL:0000051!4.09e-10!53;CL:0000791!3.56e-08!18;CL:0000789!3.56e-08!18;CL:0002420!3.56e-08!18;CL:0002419!3.56e-08!18;CL:0000790!3.56e-08!18;CL:0000860!1.01e-07!45;CL:0002057!1.34e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.04e-08;18!CL:0000789;3.04e-08;18!CL:0002419;3.04e-08;18!CL:0000084;7.30e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.04e-14,136;CL:0002087,4.82e-13,115;CL:0000988,2.69e-12,177;CL:0000037,9.39e-12,168;CL:0002032,4.20e-11,161;CL:0000837,4.20e-11,161;CL:0000838,1.09e-10,52;CL:0000542,1.49e-10,53;CL:0000051,1.49e-10,53;CL:0002031,1.62e-10,120;CL:0000791,1.83e-08,18;CL:0000789,1.83e-08,18;CL:0002420,1.83e-08,18;CL:0002419,1.83e-08,18;CL:0000790,1.83e-08,18;CL:0000860,8.40e-08,42;CL:0002057,8.40e-08,42;CL:0000084,7.84e-07,25;CL:0000827,7.84e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;3.04e-08;18 | |||
|ontology_enrichment_disease=DOID:3095!4.37e-07!22;DOID:2994!4.37e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.49e-07;22!DOID:2994;9.49e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.21e-07,22;DOID:2994,4.21e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.69e-11!115;UBERON:0000178!1.36e-07!15;UBERON:0000179!1.36e-07!15;UBERON:0000463!1.36e-07!15;UBERON:0001049!3.57e-07!57;UBERON:0005068!3.57e-07!57;UBERON:0006241!3.57e-07!57;UBERON:0007135!3.57e-07!57;UBERON:0002390!5.63e-07!102;UBERON:0003061!5.63e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.96e-08;15!UBERON:0000179;3.96e-08;15!UBERON:0000463;3.96e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.92e-10,114;UBERON:0000178,7.40e-08,15;UBERON:0000179,7.40e-08,15;UBERON:0000463,7.40e-08,15;UBERON:0001049,4.82e-07,56;UBERON:0005068,4.82e-07,56;UBERON:0006241,4.82e-07,56;UBERON:0007135,4.82e-07,56;UBERON:0002390,7.67e-07,98;UBERON:0003061,7.67e-07,98 | |||
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| ||
|short_description=p5@RNF44 | |short_description=p5@RNF44 | ||
}} | }} |
Latest revision as of 04:35, 17 September 2015
Short description: | p5@RNF44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RNF44_5end |
Coexpression cluster: | NA |
Association with transcript: | -39bp_to_ENST00000504434_5end |
EntrezGene: | RNF44 |
HGNC: | 19180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.04e-14 | 136 |
nongranular leukocyte | 4.82e-13 | 115 |
hematopoietic cell | 2.69e-12 | 177 |
hematopoietic stem cell | 9.39e-12 | 168 |
hematopoietic oligopotent progenitor cell | 4.20e-11 | 161 |
hematopoietic multipotent progenitor cell | 4.20e-11 | 161 |
lymphoid lineage restricted progenitor cell | 1.09e-10 | 52 |
lymphocyte | 1.49e-10 | 53 |
common lymphoid progenitor | 1.49e-10 | 53 |
hematopoietic lineage restricted progenitor cell | 1.62e-10 | 120 |
mature alpha-beta T cell | 1.83e-08 | 18 |
alpha-beta T cell | 1.83e-08 | 18 |
immature T cell | 1.83e-08 | 18 |
mature T cell | 1.83e-08 | 18 |
immature alpha-beta T cell | 1.83e-08 | 18 |
classical monocyte | 8.40e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.40e-08 | 42 |
T cell | 7.84e-07 | 25 |
pro-T cell | 7.84e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.92e-10 | 114 |
blood | 7.40e-08 | 15 |
haemolymphatic fluid | 7.40e-08 | 15 |
organism substance | 7.40e-08 | 15 |
neural tube | 4.82e-07 | 56 |
neural rod | 4.82e-07 | 56 |
future spinal cord | 4.82e-07 | 56 |
neural keel | 4.82e-07 | 56 |
hematopoietic system | 7.67e-07 | 98 |
blood island | 7.67e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.21e-07 | 22 |
germ cell cancer | 4.21e-07 | 22 |