FFCP PHASE1:Hg19::chr5:175964901..175964916,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:175964901..175964916,-
|short_description=p12@RNF44
|description=CAGE_peak_12_at_RNF44_5end
|association_with_transcript=-20bp_to_ENST00000504434_5end
|En...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22838 | |EntrezGene=22838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19180 | |HGNC=19180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000504434_5end | |||
|cluster_id=chr5:175964901..175964916,- | |||
|description=CAGE_peak_12_at_RNF44_5end | |||
|id=chr5:175964901..175964916,- | |||
|ontology_enrichment_celltype=CL:0000738!1.68e-13!140;CL:0000037!1.15e-12!172;CL:0000566!1.15e-12!172;CL:0000988!3.62e-12!182;CL:0002032!2.01e-11!165;CL:0000837!2.01e-11!165;CL:0002087!3.17e-11!119;CL:0000860!6.26e-11!45;CL:0002057!6.64e-11!42;CL:0002031!1.87e-10!124;CL:0000766!1.63e-08!76;CL:0000763!5.18e-07!112;CL:0000049!5.18e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000094;7.71e-09;8!CL:0000860;1.17e-08;33!CL:0002057;1.17e-08;33!CL:0000039;4.42e-08;7!CL:0000586;4.42e-08;7!CL:0000791;6.60e-08;18!CL:0000789;6.60e-08;18!CL:0002419;6.60e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,2.77e-09,8;CL:0000738,2.79e-09,136;CL:0000037,2.77e-08,168;CL:0000039,4.17e-08,7;CL:0000586,4.17e-08,7;CL:0000791,4.87e-08,18;CL:0000789,4.87e-08,18;CL:0002420,4.87e-08,18;CL:0002419,4.87e-08,18;CL:0000790,4.87e-08,18;CL:0000860,5.12e-08,42;CL:0002057,5.12e-08,42;CL:0000988,9.58e-08,177;CL:0002032,2.25e-07,161;CL:0000837,2.25e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;6.60e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;2.47e-07;22!DOID:2994;2.47e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.93e-07,22;DOID:2994,3.93e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.27e-09!102;UBERON:0003061!2.27e-09!102;UBERON:0002193!5.19e-09!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.77e-07;15!UBERON:0000179;2.77e-07;15!UBERON:0000463;2.77e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.55e-07,15;UBERON:0000179,1.55e-07,15;UBERON:0000463,1.55e-07,15 | |||
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| ||
|short_description=p12@RNF44 | |||
}} | }} |
Latest revision as of 04:34, 17 September 2015
Short description: | p12@RNF44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RNF44_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000504434_5end |
EntrezGene: | RNF44 |
HGNC: | 19180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 2.77e-09 | 8 |
leukocyte | 2.79e-09 | 136 |
hematopoietic stem cell | 2.77e-08 | 168 |
germ line cell | 4.17e-08 | 7 |
germ cell | 4.17e-08 | 7 |
mature alpha-beta T cell | 4.87e-08 | 18 |
alpha-beta T cell | 4.87e-08 | 18 |
immature T cell | 4.87e-08 | 18 |
mature T cell | 4.87e-08 | 18 |
immature alpha-beta T cell | 4.87e-08 | 18 |
classical monocyte | 5.12e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.12e-08 | 42 |
hematopoietic cell | 9.58e-08 | 177 |
hematopoietic oligopotent progenitor cell | 2.25e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.55e-07 | 15 |
haemolymphatic fluid | 1.55e-07 | 15 |
organism substance | 1.55e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.93e-07 | 22 |
germ cell cancer | 3.93e-07 | 22 |