FFCP PHASE1:Hg19::chr5:175964816..175964887,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:175964816..175964887,- to FFCP PHASE1:Hg19::chr5:175964816..175964887,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22838 | |EntrezGene=22838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19180 | |HGNC=19180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000504434_5end | |||
|cluster_id=chr5:175964816..175964887,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_RNF44_5end | |||
|id=chr5:175964816..175964887,- | |||
|ontology_enrichment_celltype=CL:0000766!5.89e-18!76;CL:0002057!3.37e-16!42;CL:0000738!3.84e-16!140;CL:0000988!6.77e-15!182;CL:0000037!1.06e-14!172;CL:0000566!1.06e-14!172;CL:0000860!3.45e-14!45;CL:0000557!8.10e-14!71;CL:0002032!8.60e-14!165;CL:0000837!8.60e-14!165;CL:0000763!2.71e-13!112;CL:0000049!2.71e-13!112;CL:0002031!1.69e-12!124;CL:0000839!2.26e-12!70;CL:0002087!3.60e-12!119;CL:0002009!1.43e-11!65;CL:0002194!1.57e-11!63;CL:0000576!1.57e-11!63;CL:0000040!1.57e-11!63;CL:0000559!1.57e-11!63;CL:0000094!7.71e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.66e-12;33!CL:0002057;1.66e-12;33!CL:0000473;7.50e-10;39!CL:0000234;7.50e-10;39!CL:0000576;2.15e-09;48!CL:0000766;2.45e-09;69!CL:0000094;7.37e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.85e-20,72;CL:0000738,1.84e-17,136;CL:0000860,3.37e-16,42;CL:0002057,3.37e-16,42;CL:0000988,3.54e-16,177;CL:0000037,8.55e-16,168;CL:0000557,1.04e-15,67;CL:0000473,6.32e-15,48;CL:0000234,6.32e-15,48;CL:0002032,7.22e-15,161;CL:0000837,7.22e-15,161;CL:0000763,1.22e-14,108;CL:0000049,1.22e-14,108;CL:0000839,3.93e-14,66;CL:0002031,1.07e-13,120;CL:0002087,2.24e-13,115;CL:0002009,2.45e-13,61;CL:0002194,2.47e-13,59;CL:0000576,2.47e-13,59;CL:0000040,2.47e-13,59;CL:0000559,2.47e-13,59;CL:0000094,7.71e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;4.65e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.73e-18!112;UBERON:0002390!2.30e-16!102;UBERON:0003061!2.30e-16!102;UBERON:0007023!1.46e-13!115;UBERON:0002371!5.39e-10!80;UBERON:0001474!1.03e-09!86;UBERON:0001049!1.43e-09!57;UBERON:0005068!1.43e-09!57;UBERON:0006241!1.43e-09!57;UBERON:0007135!1.43e-09!57;UBERON:0002405!2.11e-09!115;UBERON:0002780!1.28e-08!41;UBERON:0001890!1.28e-08!41;UBERON:0006240!1.28e-08!41;UBERON:0003080!1.30e-08!42;UBERON:0000178!1.39e-08!15;UBERON:0000179!1.39e-08!15;UBERON:0000463!1.39e-08!15;UBERON:0002619!3.01e-08!22;UBERON:0001950!6.69e-08!20;UBERON:0001893!1.04e-07!34;UBERON:0002020!1.17e-07!34;UBERON:0003528!1.17e-07!34;UBERON:0001869!1.62e-07!32;UBERON:0002616!2.17e-07!59;UBERON:0002791!2.42e-07!33;UBERON:0001017!3.87e-07!82;UBERON:0005743!7.45e-07!86;UBERON:0000955!7.94e-07!69;UBERON:0006238!7.94e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.34e-08;15!UBERON:0000179;1.34e-08;15!UBERON:0000463;1.34e-08;15!UBERON:0002619;3.14e-08;22!UBERON:0001950;7.62e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.55e-20,108;UBERON:0002390,5.15e-18,98;UBERON:0003061,5.15e-18,98;UBERON:0002405,6.44e-14,93;UBERON:0007023,3.06e-13,114;UBERON:0002371,2.31e-11,76;UBERON:0001474,5.50e-11,82;UBERON:0001049,1.46e-09,56;UBERON:0005068,1.46e-09,56;UBERON:0006241,1.46e-09,56;UBERON:0007135,1.46e-09,56;UBERON:0004765,2.18e-09,90;UBERON:0000073,2.76e-09,53;UBERON:0002616,2.76e-09,53;UBERON:0002780,1.28e-08,41;UBERON:0001890,1.28e-08,41;UBERON:0003080,1.28e-08,41;UBERON:0006240,1.28e-08,41;UBERON:0000178,1.39e-08,15;UBERON:0000179,1.39e-08,15;UBERON:0000463,1.39e-08,15;UBERON:0002619,3.01e-08,22;UBERON:0001950,6.69e-08,20;UBERON:0001893,1.04e-07,34;UBERON:0003528,1.17e-07,34;UBERON:0002020,1.17e-07,34;UBERON:0001869,1.62e-07,32;UBERON:0002791,3.28e-07,32;UBERON:0001017,4.22e-07,81;UBERON:0000955,8.60e-07,68;UBERON:0006238,8.60e-07,68 | |||
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| ||
|short_description=p1@RNF44 | |||
}} | }} |
Latest revision as of 04:33, 17 September 2015
Short description: | p1@RNF44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF44_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000504434_5end |
EntrezGene: | RNF44 |
HGNC: | 19180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.85e-20 | 72 |
leukocyte | 1.84e-17 | 136 |
classical monocyte | 3.37e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.37e-16 | 42 |
hematopoietic cell | 3.54e-16 | 177 |
hematopoietic stem cell | 8.55e-16 | 168 |
granulocyte monocyte progenitor cell | 1.04e-15 | 67 |
defensive cell | 6.32e-15 | 48 |
phagocyte | 6.32e-15 | 48 |
hematopoietic oligopotent progenitor cell | 7.22e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.22e-15 | 161 |
myeloid cell | 1.22e-14 | 108 |
common myeloid progenitor | 1.22e-14 | 108 |
myeloid lineage restricted progenitor cell | 3.93e-14 | 66 |
hematopoietic lineage restricted progenitor cell | 1.07e-13 | 120 |
nongranular leukocyte | 2.24e-13 | 115 |
macrophage dendritic cell progenitor | 2.45e-13 | 61 |
monopoietic cell | 2.47e-13 | 59 |
monocyte | 2.47e-13 | 59 |
monoblast | 2.47e-13 | 59 |
promonocyte | 2.47e-13 | 59 |
granulocyte | 7.71e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.55e-20 | 108 |
hematopoietic system | 5.15e-18 | 98 |
blood island | 5.15e-18 | 98 |
immune system | 6.44e-14 | 93 |
adult organism | 3.06e-13 | 114 |
bone marrow | 2.31e-11 | 76 |
bone element | 5.50e-11 | 82 |
neural tube | 1.46e-09 | 56 |
neural rod | 1.46e-09 | 56 |
future spinal cord | 1.46e-09 | 56 |
neural keel | 1.46e-09 | 56 |
skeletal element | 2.18e-09 | 90 |
regional part of nervous system | 2.76e-09 | 53 |
regional part of brain | 2.76e-09 | 53 |
regional part of forebrain | 1.28e-08 | 41 |
forebrain | 1.28e-08 | 41 |
anterior neural tube | 1.28e-08 | 41 |
future forebrain | 1.28e-08 | 41 |
blood | 1.39e-08 | 15 |
haemolymphatic fluid | 1.39e-08 | 15 |
organism substance | 1.39e-08 | 15 |
regional part of cerebral cortex | 3.01e-08 | 22 |
neocortex | 6.69e-08 | 20 |
telencephalon | 1.04e-07 | 34 |
brain grey matter | 1.17e-07 | 34 |
gray matter | 1.17e-07 | 34 |
cerebral hemisphere | 1.62e-07 | 32 |
regional part of telencephalon | 3.28e-07 | 32 |
central nervous system | 4.22e-07 | 81 |
brain | 8.60e-07 | 68 |
future brain | 8.60e-07 | 68 |