FFCP PHASE1:Hg19::chr5:175963631..175963657,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22838 | |EntrezGene=22838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19180 | |HGNC=19180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-300bp_to_ENST00000509404_5end | |association_with_transcript=-300bp_to_ENST00000509404_5end | ||
|cluster_id=chr5:175963631..175963657,- | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_4_at_RNF44_5end | |description=CAGE_peak_4_at_RNF44_5end | ||
|id=chr5:175963631..175963657,- | |id=chr5:175963631..175963657,- | ||
|ontology_enrichment_celltype=CL:0000988!1.76e-34!182;CL:0000037!2.05e-34!172;CL:0000566!2.05e-34!172;CL:0002032!6.60e-31!165;CL:0000837!6.60e-31!165;CL:0000542!2.24e-26!53;CL:0000051!2.24e-26!53;CL:0000838!3.29e-26!52;CL:0000738!7.37e-26!140;CL:0002087!5.87e-23!119;CL:0002031!1.35e-19!124;CL:0000084!8.78e-14!25;CL:0000827!8.78e-14!25;CL:0000791!3.43e-12!18;CL:0000789!3.43e-12!18;CL:0002420!3.43e-12!18;CL:0002419!3.43e-12!18;CL:0000790!3.43e-12!18;CL:0000945!9.29e-12!24;CL:0000826!9.29e-12!24;CL:0000763!1.37e-09!112;CL:0000049!1.37e-09!112;CL:0000236!5.23e-09!14;CL:0000625!2.37e-08!11 | |ontology_enrichment_celltype=CL:0000988!1.76e-34!182;CL:0000037!2.05e-34!172;CL:0000566!2.05e-34!172;CL:0002032!6.60e-31!165;CL:0000837!6.60e-31!165;CL:0000542!2.24e-26!53;CL:0000051!2.24e-26!53;CL:0000838!3.29e-26!52;CL:0000738!7.37e-26!140;CL:0002087!5.87e-23!119;CL:0002031!1.35e-19!124;CL:0000084!8.78e-14!25;CL:0000827!8.78e-14!25;CL:0000791!3.43e-12!18;CL:0000789!3.43e-12!18;CL:0002420!3.43e-12!18;CL:0002419!3.43e-12!18;CL:0000790!3.43e-12!18;CL:0000945!9.29e-12!24;CL:0000826!9.29e-12!24;CL:0000763!1.37e-09!112;CL:0000049!1.37e-09!112;CL:0000236!5.23e-09!14;CL:0000625!2.37e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.20e-17;53!CL:0000084;1.48e-15;25!CL:0000791;8.43e-14;18!CL:0000789;8.43e-14;18!CL:0002419;8.43e-14;18!CL:0000945;1.48e-13;24!CL:0000236;8.79e-10;13!CL:0000625;2.30e-09;11!CL:0000988;1.31e-07;177!CL:0002087;1.87e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.47e-38,177;CL:0000037,2.41e-38,168;CL:0002032,2.48e-34,161;CL:0000837,2.48e-34,161;CL:0000542,3.87e-30,53;CL:0000051,3.87e-30,53;CL:0000838,6.02e-30,52;CL:0000738,1.29e-28,136;CL:0002087,5.68e-25,115;CL:0002031,1.77e-21,120;CL:0000084,1.25e-15,25;CL:0000827,1.25e-15,25;CL:0000791,8.53e-14,18;CL:0000789,8.53e-14,18;CL:0002420,8.53e-14,18;CL:0002419,8.53e-14,18;CL:0000790,8.53e-14,18;CL:0000945,2.68e-13,24;CL:0000826,2.68e-13,24;CL:0000236,3.92e-10,14;CL:0000763,4.59e-10,108;CL:0000049,4.59e-10,108;CL:0000625,2.23e-09,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.20e-17;53!CL:0000790;8.43e-14;18 | |||
|ontology_enrichment_disease=DOID:2531!8.16e-15!51;DOID:0060083!8.16e-15!51;DOID:1240!3.39e-12!39;DOID:8692!2.06e-09!31;DOID:162!1.06e-07!235;DOID:14566!9.95e-07!239 | |ontology_enrichment_disease=DOID:2531!8.16e-15!51;DOID:0060083!8.16e-15!51;DOID:1240!3.39e-12!39;DOID:8692!2.06e-09!31;DOID:162!1.06e-07!235;DOID:14566!9.95e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1240;6.24e-11;39!DOID:2531;1.28e-10;51!DOID:0060083;1.28e-10;51!DOID:8692;3.31e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.45e-16,51;DOID:0060083,1.45e-16,51;DOID:1240,1.23e-13,39;DOID:8692,1.94e-10,31 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.04e-07!15;UBERON:0000179!2.04e-07!15;UBERON:0000463!2.04e-07!15;UBERON:0002193!2.61e-07!112;UBERON:0002390!6.86e-07!102;UBERON:0003061!6.86e-07!102 | |ontology_enrichment_uberon=UBERON:0000178!2.04e-07!15;UBERON:0000179!2.04e-07!15;UBERON:0000463!2.04e-07!15;UBERON:0002193!2.61e-07!112;UBERON:0002390!6.86e-07!102;UBERON:0003061!6.86e-07!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.83e-08;15!UBERON:0000179;4.83e-08;15!UBERON:0000463;4.83e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.50e-08,108;UBERON:0000178,5.34e-08,15;UBERON:0000179,5.34e-08,15;UBERON:0000463,5.34e-08,15;UBERON:0002390,1.19e-07,98;UBERON:0003061,1.19e-07,98 | |||
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| ||
|short_description=p4@RNF44 | |short_description=p4@RNF44 | ||
}} | }} |
Latest revision as of 04:26, 17 September 2015
Short description: | p4@RNF44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RNF44_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | -300bp_to_ENST00000509404_5end |
EntrezGene: | RNF44 |
HGNC: | 19180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.47e-38 | 177 |
hematopoietic stem cell | 2.41e-38 | 168 |
hematopoietic oligopotent progenitor cell | 2.48e-34 | 161 |
hematopoietic multipotent progenitor cell | 2.48e-34 | 161 |
lymphocyte | 3.87e-30 | 53 |
common lymphoid progenitor | 3.87e-30 | 53 |
lymphoid lineage restricted progenitor cell | 6.02e-30 | 52 |
leukocyte | 1.29e-28 | 136 |
nongranular leukocyte | 5.68e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 1.77e-21 | 120 |
T cell | 1.25e-15 | 25 |
pro-T cell | 1.25e-15 | 25 |
mature alpha-beta T cell | 8.53e-14 | 18 |
alpha-beta T cell | 8.53e-14 | 18 |
immature T cell | 8.53e-14 | 18 |
mature T cell | 8.53e-14 | 18 |
immature alpha-beta T cell | 8.53e-14 | 18 |
lymphocyte of B lineage | 2.68e-13 | 24 |
pro-B cell | 2.68e-13 | 24 |
B cell | 3.92e-10 | 14 |
myeloid cell | 4.59e-10 | 108 |
common myeloid progenitor | 4.59e-10 | 108 |
CD8-positive, alpha-beta T cell | 2.23e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.50e-08 | 108 |
blood | 5.34e-08 | 15 |
haemolymphatic fluid | 5.34e-08 | 15 |
organism substance | 5.34e-08 | 15 |
hematopoietic system | 1.19e-07 | 98 |
blood island | 1.19e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.45e-16 | 51 |
immune system cancer | 1.45e-16 | 51 |
leukemia | 1.23e-13 | 39 |
myeloid leukemia | 1.94e-10 | 31 |