FFCP PHASE1:Hg19::chr12:12510270..12510289,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:12510270..12510289,+
|short_description=p5@LOH12CR1
|description=CAGE_peak_5_at_LOH12CR1_5end
|association_with_transcript=-2bp_to_ENST00000543990_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=118426 | |EntrezGene=118426 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17950 | |HGNC=17950 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000543990_5end | |||
|cluster_id=chr12:12510270..12510289,+ | |||
|coexpression_cluster_id=C890 | |||
|description=CAGE_peak_5_at_LOH12CR1_5end | |||
|id=chr12:12510270..12510289,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.52e-34!140;CL:0002087!1.36e-26!119;CL:0002031!1.78e-25!124;CL:0000988!1.97e-25!182;CL:0000037!3.46e-25!172;CL:0000566!3.46e-25!172;CL:0002032!5.90e-23!165;CL:0000837!5.90e-23!165;CL:0000766!3.03e-21!76;CL:0002057!8.93e-20!42;CL:0000860!1.93e-18!45;CL:0000557!2.14e-18!71;CL:0002009!1.12e-16!65;CL:0002194!1.08e-15!63;CL:0000576!1.08e-15!63;CL:0000040!1.08e-15!63;CL:0000559!1.08e-15!63;CL:0000839!1.56e-15!70;CL:0000763!1.86e-13!112;CL:0000049!1.86e-13!112;CL:0000542!1.82e-09!53;CL:0000051!1.82e-09!53;CL:0000838!3.10e-09!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.19e-20;33!CL:0002057;1.19e-20;33!CL:0000473;1.29e-16;39!CL:0000234;1.29e-16;39!CL:0000576;1.70e-16;48!CL:0000766;2.53e-15;69!CL:0002087;8.32e-13;104!CL:0000738;9.83e-12;136!CL:0000094;3.37e-11;8!CL:0000624;4.21e-10;6!CL:0000081;7.55e-10;11!CL:0000451;6.81e-09;10!CL:0000840;2.10e-08;5!CL:0002393;3.61e-08;6!CL:0002397;3.61e-08;6!CL:0000988;1.69e-07;177!CL:0000542;2.38e-07;53!CL:0000990;8.80e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.12e-55,136;CL:0000988,7.56e-43,177;CL:0000037,3.09e-42,168;CL:0002087,4.49e-42,115;CL:0002031,3.11e-41,120;CL:0002032,5.55e-38,161;CL:0000837,5.55e-38,161;CL:0000766,1.50e-37,72;CL:0000557,6.73e-32,67;CL:0000860,1.26e-31,42;CL:0002057,1.26e-31,42;CL:0000473,9.25e-30,48;CL:0000234,9.25e-30,48;CL:0002009,9.92e-30,61;CL:0002194,9.26e-28,59;CL:0000576,9.26e-28,59;CL:0000040,9.26e-28,59;CL:0000559,9.26e-28,59;CL:0000839,1.81e-27,66;CL:0000763,4.67e-25,108;CL:0000049,4.67e-25,108;CL:0000838,4.74e-12,52;CL:0000542,1.14e-11,53;CL:0000051,1.14e-11,53;CL:0002393,1.64e-11,9;CL:0002397,1.64e-11,9;CL:0000094,2.59e-11,8;CL:0000624,4.50e-10,6;CL:0000081,6.12e-10,11;CL:0000451,8.38e-09,10;CL:0000134,1.63e-08,354;CL:0000840,2.37e-08,5;CL:0001029,2.37e-08,5;CL:0002320,6.25e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.83e-23;42!CL:0000051;2.38e-07;53!CL:0000049;3.27e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.47e-18!102;UBERON:0003061!1.47e-18!102;UBERON:0002371!2.72e-16!80;UBERON:0001474!4.01e-15!86;UBERON:0002193!9.15e-15!112;UBERON:0004765!1.04e-11!101;UBERON:0001434!1.04e-11!101;UBERON:0002405!1.97e-09!115;UBERON:0002780!3.57e-08!41;UBERON:0001890!3.57e-08!41;UBERON:0006240!3.57e-08!41;UBERON:0001893!8.75e-08!34;UBERON:0003080!1.18e-07!42;UBERON:0002020!1.45e-07!34;UBERON:0003528!1.45e-07!34;UBERON:0001869!1.89e-07!32;UBERON:0002791!2.12e-07!33;UBERON:0001950!2.13e-07!20;UBERON:0001049!2.64e-07!57;UBERON:0005068!2.64e-07!57;UBERON:0006241!2.64e-07!57;UBERON:0007135!2.64e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.40e-11;20!UBERON:0002619;9.41e-10;22!UBERON:0001869;1.58e-09;32!UBERON:0002791;7.09e-09;32!UBERON:0001893;8.49e-09;34!UBERON:0000956;3.69e-08;25!UBERON:0000203;3.69e-08;25!UBERON:0003528;9.78e-08;34!UBERON:0002020;9.78e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.25e-27,98;UBERON:0003061,1.25e-27,98;UBERON:0002371,2.53e-26,76;UBERON:0002193,2.07e-24,108;UBERON:0001474,2.20e-24,82;UBERON:0002405,5.08e-21,93;UBERON:0004765,6.87e-21,90;UBERON:0001434,2.58e-18,100;UBERON:0001950,2.87e-11,20;UBERON:0001869,7.00e-11,32;UBERON:0001893,6.16e-10,34;UBERON:0002619,6.43e-10,22;UBERON:0002791,1.07e-09,32;UBERON:0002780,3.88e-09,41;UBERON:0001890,3.88e-09,41;UBERON:0003080,3.88e-09,41;UBERON:0006240,3.88e-09,41;UBERON:0003528,7.64e-09,34;UBERON:0002020,7.64e-09,34;UBERON:0000956,2.67e-08,25;UBERON:0000203,2.67e-08,25;UBERON:0003081,1.90e-07,203;UBERON:0002384,3.76e-07,371;UBERON:0002204,4.88e-07,167 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0.136874425072884,0,2.67446920117829,2.05251473624864,2.67616656466509,3.14691421479123,3.83829398097213,5.41856431606266,0,0.30120591877825,0,0.154934401160603,0.284338464974843,0.293600439334847,4.43196326825502,6.61796676651468,4.55722828503289,0,0.32389366601898,0.77272670290256,0.726991193897824,1.51150377475524,2.42584061187816,2.32429036905685,2.05583944010913,4.64559556342655,2.58923153089935,1.7931249457037,1.18241114944293,3.7922024881028,7.74581620300591,8.12558919566051,3.9530891303947,2.45615535052061,2.47195832889593,3.36692281607993,5.45579346029359,3.83602275479425,0.329851300186716,2.79249120670285,0,2.61188314765726,1.70215567407342,1.24564449799115,4.77372463987812,3.65038042894141,3.04064382587163,0.605399502633369,1.47311054395026,0.949387162322653,2.74631872205524,3.4016687994407,1.67726916406701,3.14520167210186,1.05123824989054,0.964353520182481,6.27028036230747,4.37616689837998,1.64397738388171,5.27988733383968,1.09227722252426,2.66852776159066,0,0.400395987036012,0.574752439954483,0.661044872784862,0.954053754535364,21.0608798570496,33.4725197941435,33.2577708468949,1.32171328579026,3.92355994087075,0.263384084775077,5.11445402295966,16.1134412727158,20.9713528979499,0.334372990781356,22.8145586643513,12.7830907548378,17.534405556712,0.334231370655521,22.6846548755625,10.1905591508466,1.89562704635511,1.5370958367081,0.910415432919148,1.64437904603676,1.65810010671509,0.869409257205157,8.45233410023744,8.02622484269139,6.27213142829861,0.906474741580529,8.43085085924227,9.62156847351364,3.79529538029254,0.637130828648193,0,0,0.301150238155546,0.127986611154418,0,0,0,10.6851573909108,13.3720097891754,9.70323506014753,0,0,0,0.722878304769133,0,0,0.795285947051099,0.486634870302636,0.189069634328136,0,0.351339142772504,0.72038491523742,0,0.370784442784429,2.92092654289215,4.17911369518241,3.32394901297163,5.00830311041218,2.28797964312051,5.57186251994347,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0.949265659568129,0,2.63560834872127,15.511210565933,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0,0.933633106199299,0,0,0.151357427644931,0,0,0,0,0.448346041655403,0,0.323745888736263,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0.168336113954066,0,0,0.438977620880838,0.30648779579902,0.150238058906597,0.226864366320042,0,0,0.635795703478686,0.900273288253207,0.103052529238439,0,0.18611685633159,0.168776332241266,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0,0,0,0,0.286804595389004,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,1.56449532329816,0.643240938192885,0,0,0,0.354920400119532,0.337169380156203,0.241011029883482,0.220587945464788,0,0.474541238222193,0.269662616320329,0.196221465125346,0.769494313892781,0,0,0,0,0,0,1.18157981336281,0,0.491953754172454,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0,0,0.790204397959275,0,0,3.51006397708857,1.78357394746474,0,0,0.283550194484773,0.179117045405697,0.290633938513962,0,1.97065295158377,0.528290604079356,1.65862492432618,0.144119953416961,1.2624243342638,0.380987365753014,0.763976851116555,0,1.71072446022705,0.205654985406647,0.901029173531752,0.571652865261156,0.224262168690721,0,0.07333828582095,0.646358578788889,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0.410952645100767,0.179060963239896,0.560425719967636,8.47232268868287,16.1720681144638,6.93052395910641,0,0,0,0,0.637938751653163,5.24304916763028,2.99161459204025,13.6757119433892,0,0,0,0,0,0.315404830067869,0.117141414992713,1.20378439891088,0,0,0,0.553107505625109,0.0868836144680828,0.391602314925481,0.686286847621712,11.5790094628817,17.2571360654893,21.2387840028854,0.606255142892519,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0.308419387605311,0.177561725313127,0.410635780069046,0.519254429183621,0.232420756919918,0.483437798366489,0,0.276242966807689,0,0.364182336013434,0.131124414959424,0,0.0770153371044148,1.56869953835371,0,0.105551628892876,0,0,0.215915916102139,0,0.541892875087706,0,0.254876273045038,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0.154048617114644,0.460511024178389,0.275673144969061,0,0.145016693914229,0.340906509664404,0.445160178233687,0.165284915360978,0.192190067365106,0.255225424989168,0.50578890427775,0,0.31481234683064,1.3940745403212,0.616067160352178,0,0,0,0.429374660225974,0.372158369359667,0,0,0,0,0.95460974377781,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,1.13008116620243,0,0,0,0.578775534266688,0,0,0.6196469961995,0.281695602532241,0,0,0.35667105148125,0,0.211107635297664,0,0,0,0.192444225451024,0,0,0.282431402330337,0,0,0.443430153536676,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0.106824071127473,0,0,0.7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| ||
|short_description=p5@LOH12CR1 | |||
}} | }} |
Latest revision as of 04:17, 17 September 2015
Short description: | p5@LOH12CR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LOH12CR1_5end |
Coexpression cluster: | C890_CD19_CD4_Peripheral_CD8_Natural_Dendritic_Mast |
Association with transcript: | -2bp_to_ENST00000543990_5end |
EntrezGene: | LOH12CR1 |
HGNC: | 17950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.25e-27 | 98 |
blood island | 1.25e-27 | 98 |
bone marrow | 2.53e-26 | 76 |
hemolymphoid system | 2.07e-24 | 108 |
bone element | 2.20e-24 | 82 |
immune system | 5.08e-21 | 93 |
skeletal element | 6.87e-21 | 90 |
skeletal system | 2.58e-18 | 100 |
neocortex | 2.87e-11 | 20 |
cerebral hemisphere | 7.00e-11 | 32 |
telencephalon | 6.16e-10 | 34 |
regional part of cerebral cortex | 6.43e-10 | 22 |
regional part of telencephalon | 1.07e-09 | 32 |
regional part of forebrain | 3.88e-09 | 41 |
forebrain | 3.88e-09 | 41 |
anterior neural tube | 3.88e-09 | 41 |
future forebrain | 3.88e-09 | 41 |
brain grey matter | 7.64e-09 | 34 |
gray matter | 7.64e-09 | 34 |
cerebral cortex | 2.67e-08 | 25 |
pallium | 2.67e-08 | 25 |
lateral plate mesoderm | 1.90e-07 | 203 |
connective tissue | 3.76e-07 | 371 |
musculoskeletal system | 4.88e-07 | 167 |