FFCP PHASE1:Hg19::chr13:32889688..32889697,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=675 | |EntrezGene=675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1101 | |HGNC=1101 | ||
|TSSclassifier=strong | |||
|UniProt=E9PIQ1 | |UniProt=E9PIQ1 | ||
|association_with_transcript=46bp_to_ENST00000530893_5end | |association_with_transcript=46bp_to_ENST00000530893_5end | ||
|cluster_id=chr13:32889688..32889697,+ | |||
|description=CAGE_peak_4_at_BRCA2_5end | |description=CAGE_peak_4_at_BRCA2_5end | ||
|id=chr13:32889688..32889697,+ | |id=chr13:32889688..32889697,+ | ||
|ontology_enrichment_celltype=CL:0000037!3.92e-12!172;CL:0000566!3.92e-12!172;CL:0000988!5.86e-12!182;CL:0002032!1.00e-10!165;CL:0000837!1.00e-10!165;CL:0000542!3.01e-08!53;CL:0000051!3.01e-08!53;CL:0000548!9.49e-08!679;CL:0000004!9.49e-08!679;CL:0000255!9.49e-08!679;CL:0000838!9.71e-08!52;CL:0000012!1.01e-07!682;CL:0000219!3.68e-07!390 | |ontology_enrichment_celltype=CL:0000037!3.92e-12!172;CL:0000566!3.92e-12!172;CL:0000988!5.86e-12!182;CL:0002032!1.00e-10!165;CL:0000837!1.00e-10!165;CL:0000542!3.01e-08!53;CL:0000051!3.01e-08!53;CL:0000548!9.49e-08!679;CL:0000004!9.49e-08!679;CL:0000255!9.49e-08!679;CL:0000838!9.71e-08!52;CL:0000012!1.01e-07!682;CL:0000219!3.68e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.25e-16;24!CL:0000451;2.89e-13;10!CL:0000784;9.57e-11;3!CL:0000453;5.59e-10;5!CL:0000990;1.70e-08;8!CL:0001014;4.64e-07;2!CL:0001016;4.64e-07;2!CL:0002253;4.64e-07;2!CL:0000542;6.92e-07;53 | |ontology_enrichment_celltype_v019=CL:0000945;5.25e-16;24!CL:0000451;2.89e-13;10!CL:0000784;9.57e-11;3!CL:0000453;5.59e-10;5!CL:0000990;1.70e-08;8!CL:0001014;4.64e-07;2!CL:0001016;4.64e-07;2!CL:0002253;4.64e-07;2!CL:0000542;6.92e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.91e-16,24;CL:0000826,2.91e-16,24;CL:0000451,1.30e-13,10;CL:0000542,2.84e-11,53;CL:0000051,2.84e-11,53;CL:0000784,4.19e-11,3;CL:0000817,2.04e-10,3;CL:0000988,3.50e-10,177;CL:0000453,3.78e-10,5;CL:0000838,5.90e-10,52;CL:0000990,1.25e-08,8;CL:0000037,2.11e-08,168;CL:0000738,4.29e-08,136;CL:0000785,2.85e-07,2;CL:0000955,2.85e-07,2;CL:0000818,2.85e-07,2;CL:0000954,2.85e-07,2;CL:0000816,2.85e-07,2;CL:0002253,3.23e-07,2;CL:0001014,5.15e-07,2;CL:0001016,5.15e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000954;4.64e-07;2!CL:0000051;6.92e-07;53 | |ontology_enrichment_development_v019=CL:0000954;4.64e-07;2!CL:0000051;6.92e-07;53 | ||
|ontology_enrichment_disease=DOID:162!1.17e-28!235;DOID:14566!4.16e-28!239;DOID:2531!4.94e-17!51;DOID:0060083!4.94e-17!51;DOID:0050686!8.24e-17!137;DOID:0050687!5.48e-14!143;DOID:1240!2.43e-11!39;DOID:3095!6.57e-09!22;DOID:2994!6.57e-09!22;DOID:305!1.14e-08!106;DOID:8692!2.08e-07!31;DOID:0060058!9.36e-07!10 | |ontology_enrichment_disease=DOID:162!1.17e-28!235;DOID:14566!4.16e-28!239;DOID:2531!4.94e-17!51;DOID:0060083!4.94e-17!51;DOID:0050686!8.24e-17!137;DOID:0050687!5.48e-14!143;DOID:1240!2.43e-11!39;DOID:3095!6.57e-09!22;DOID:2994!6.57e-09!22;DOID:305!1.14e-08!106;DOID:8692!2.08e-07!31;DOID:0060058!9.36e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;8.16e-08;10 | |ontology_enrichment_disease_v019=DOID:0060058;8.16e-08;10 | ||
|ontology_enrichment_disease_v019_2=DOID:2531,3.76e-09,51;DOID:0060083,3.76e-09,51;DOID:0060058,4.95e-08,10 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,1.14494394852423,0.410623275218653,0.753255837568817,1.37544130346312,1.31360943119913,1.25937250101887,0,0,0,0,0,0.369754010166788,2.32401601740905,1.56386155736164,0.293600439334847,0.553995408531877,0.200544447470142,0,0,0,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0.689491361473237,0,0,0.188242339542605,0,0,0.612167784741805,0,0,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0.251248665256743,1.5644487552606,0,0.605399502633369,0.368277635987565,0.316462387440884,0.211255286311942,0.212604299965044,0.419317291016752,0,0.150176892841506,0,0.570025487482497,0.19891667719909,0.730656615058536,0,0,0,0,0,0.574752439954483,0,0,1.1384259382189,1.76171156811282,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0.786021525498329,0.616804496998528,0.167186495390678,0.32592226663359,0.946895611469467,0,0.111410456885174,0.883817722424512,0.443067789167242,0,0.384273959177026,0,0.164437904603676,0.552700035571697,0,0.14828656316206,0,0,0.226618685395132,0.766440987203842,0.34362744548263,0.759059076058509,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0.289648807765598,0,0,0.255725123687061,0.722878304769133,0.50133791063589,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0,0,0,0,0,0,2.38490624305342,4.0039643754609,1.85728750664782,0,0,0,0,0,0.550236083880135,0,0,0,0.66944122552934,0,0,0,0.367663080345869,0,0.267899184852239,0.22452937262617,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,0,0.286836620748814,0.354668382198357,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0.352303495931295,0.647491777472526,0.561803226808994,0.204154171254893,0.368502951935304,0.103325781175765,0,0,0,0.718618141816238,0.336672227908132,0.250237039743928,0,0,0.30648779579902,0.300476117813194,0.340296549480063,0.717558542755448,0,0,0,0.103052529238439,0,0,0.506328996723799,0.194874010322397,0.504867548488229,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0.731842236777572,1.19276791489337,0.464775771478074,0.621966330092223,0.756962552626885,0.72995471815166,0,0,0,0,0,0.118306800039844,0.505754070234305,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0.245976877086227,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0.268675568108545,0,0,0,0.088048434013226,0,0,0,0.571481048629521,0,0,0,0.616964956219941,0,0.285826432630578,0.112131084345361,0,0.2933531432838,0,0,0.845302752556,0,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,0,1.42636905040718,0.289562613335158,0.205476322550383,0.358121926479791,0.448340575974109,0.788123040807709,0.646882724578552,0.385029108839245,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.574890092096664,0,0.232420756919918,0.483437798366489,0,0,0.114814448164607,0.182091168006717,0.131124414959424,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0.877039506583738,0.784306353074702,0,0,0,0.103041011647722,1.64825036673018,0.907604499126468,0,0,0,0.193341436584244,0.154048617114644,0.307007349452259,0.689182862422653,0.107420244868274,0,0.511359764496605,0.178064071293475,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,0,0,0,0,0,0,0.539617372749944,0,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0.709522128141196,0,0,0,0.349934720244983,0,0,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.320472213382419,0,2.20536194382929,2.04383492638291,2.30830740762312,1.28055318027145,1.11598390910176,0.997896857164083,0.383010740264733,0.423347165447766,0,0.561594356226918,1.14117339516596,0.47003968731907,0,0.338583555603207,0.642352300414798,0.201799707191048,2.12923118845163,0.687010689511529,0.307240764308458,0.447352215784832,0,0.390776190804081,1.39203086947621,0,0.811367035427949,0.33307196799782,2.81974010175699,0.18714054040822,0,0.242721043499027,0.557216921387392,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0.276283915531148,0.503865495708552,0.102268682502155,1.23084805461069,0,0.179736702294654,0,0.511572370226872,0,0,0,0,0,0,0.520855522170466,0.174919999992391,0,0.568967241427498,0,0.709163045303809,1.03423011972439,0,0.173624994933292,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0.69169171316418,0.359030577639089,0.651884231532048,0,0.183195186803725,0,2.04386596391473,0.156980256395025,0.997270091400938,0.225595660617181,0.19606253431774,0.335643173951685,0.37950746544837,0.953619473882272,0,0.326465616318295,1.41353071433941,1.29833183845255,1.99052386215701,0.0884575645033392,0,2.07564790076435,2.71840665682306,1.77517314159274,0,0,0,1.64209310294099,0.391329237864179,0.2427803795340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| ||
|short_description=p4@BRCA2 | |short_description=p4@BRCA2 | ||
}} | }} |
Latest revision as of 04:01, 17 September 2015
Short description: | p4@BRCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BRCA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000530893_5end |
EntrezGene: | BRCA2 |
HGNC: | 1101 |
UniProt: | E9PIQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.91e-16 | 24 |
pro-B cell | 2.91e-16 | 24 |
dendritic cell | 1.30e-13 | 10 |
lymphocyte | 2.84e-11 | 53 |
common lymphoid progenitor | 2.84e-11 | 53 |
plasmacytoid dendritic cell | 4.19e-11 | 3 |
precursor B cell | 2.04e-10 | 3 |
hematopoietic cell | 3.50e-10 | 177 |
Langerhans cell | 3.78e-10 | 5 |
lymphoid lineage restricted progenitor cell | 5.90e-10 | 52 |
conventional dendritic cell | 1.25e-08 | 8 |
hematopoietic stem cell | 2.11e-08 | 168 |
leukocyte | 4.29e-08 | 136 |
mature B cell | 2.85e-07 | 2 |
pre-B-II cell | 2.85e-07 | 2 |
transitional stage B cell | 2.85e-07 | 2 |
small pre-B-II cell | 2.85e-07 | 2 |
immature B cell | 2.85e-07 | 2 |
epithelial cell of large intestine | 3.23e-07 | 2 |
CD1a-positive Langerhans cell | 5.15e-07 | 2 |
immature CD1a-positive Langerhans cell | 5.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.76e-09 | 51 |
immune system cancer | 3.76e-09 | 51 |
lymphoma | 4.95e-08 | 10 |