FFCP PHASE1:Hg19::chr9:32550839..32550962,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10210 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21653 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NS56 | |||
|association_with_transcript=-20bp_to_U82939_5end | |||
|cluster_id=chr9:32550839..32550962,- | |||
|coexpression_cluster_id=C1725 | |||
|description=CAGE_peak_3_at_TOPORS_5end | |||
|id=chr9:32550839..32550962,- | |||
|ontology_enrichment_celltype=CL:0000542!1.05e-16!53;CL:0000051!1.05e-16!53;CL:0000838!1.37e-16!52;CL:0000791!1.04e-10!18;CL:0000789!1.04e-10!18;CL:0002420!1.04e-10!18;CL:0002419!1.04e-10!18;CL:0000790!1.04e-10!18;CL:0000084!3.80e-10!25;CL:0000827!3.80e-10!25;CL:0000738!7.04e-08!140;CL:0000236!1.55e-07!14;CL:0000625!7.05e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.25e-11;18!CL:0000789;3.25e-11;18!CL:0002419;3.25e-11;18!CL:0000542;8.54e-11;53!CL:0000084;1.32e-10;25!CL:0000236;1.37e-07;13!CL:0000625;2.97e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.01e-16,53;CL:0000051,1.01e-16,53;CL:0000838,1.35e-16,52;CL:0000791,3.18e-11,18;CL:0000789,3.18e-11,18;CL:0002420,3.18e-11,18;CL:0002419,3.18e-11,18;CL:0000790,3.18e-11,18;CL:0000084,2.96e-10,25;CL:0000827,2.96e-10,25;CL:0000738,2.22e-09,136;CL:0000236,7.13e-08,14;CL:0000625,3.53e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.25e-11;18!CL:0000051;8.54e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.32e-20!82;UBERON:0000073!3.44e-20!94;UBERON:0001016!3.44e-20!94;UBERON:0005743!6.86e-20!86;UBERON:0000955!6.64e-16!69;UBERON:0006238!6.64e-16!69;UBERON:0001049!1.87e-15!57;UBERON:0005068!1.87e-15!57;UBERON:0006241!1.87e-15!57;UBERON:0007135!1.87e-15!57;UBERON:0002780!2.18e-14!41;UBERON:0001890!2.18e-14!41;UBERON:0006240!2.18e-14!41;UBERON:0002616!8.02e-14!59;UBERON:0007023!1.53e-13!115;UBERON:0003080!2.50e-13!42;UBERON:0002020!3.48e-12!34;UBERON:0003528!3.48e-12!34;UBERON:0001869!4.08e-12!32;UBERON:0001893!6.07e-12!34;UBERON:0002791!1.20e-11!33;UBERON:0002346!1.46e-11!90;UBERON:0003075!1.56e-11!86;UBERON:0007284!1.56e-11!86;UBERON:0003056!8.55e-10!61;UBERON:0000956!9.60e-10!25;UBERON:0000203!9.60e-10!25;UBERON:0002619!2.36e-09!22;UBERON:0001950!1.08e-08!20;UBERON:0000178!4.57e-07!15;UBERON:0000179!4.57e-07!15;UBERON:0000463!4.57e-07!15;UBERON:0000153!5.48e-07!129;UBERON:0007811!5.48e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.55e-11;32!UBERON:0003528;3.26e-11;34!UBERON:0002020;3.26e-11;34!UBERON:0002791;4.44e-11;32!UBERON:0001893;6.61e-11;34!UBERON:0002780;6.77e-11;41!UBERON:0001890;6.77e-11;41!UBERON:0000956;5.53e-10;25!UBERON:0000203;5.53e-10;25!UBERON:0000073;1.60e-09;53!UBERON:0002616;1.60e-09;53!UBERON:0002619;1.78e-09;22!UBERON:0001950;6.81e-09;20!UBERON:0000955;4.34e-08;68!UBERON:0001017;5.57e-08;75!UBERON:0001016;6.76e-08;83!UBERON:0000178;2.93e-07;15!UBERON:0000179;2.93e-07;15!UBERON:0000463;2.93e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.85e-22,89;UBERON:0001017,8.76e-22,81;UBERON:0001049,7.19e-17,56;UBERON:0005068,7.19e-17,56;UBERON:0006241,7.19e-17,56;UBERON:0007135,7.19e-17,56;UBERON:0000955,8.36e-17,68;UBERON:0006238,8.36e-17,68;UBERON:0000073,3.93e-16,53;UBERON:0002616,3.93e-16,53;UBERON:0002780,4.16e-15,41;UBERON:0001890,4.16e-15,41;UBERON:0003080,4.16e-15,41;UBERON:0006240,4.16e-15,41;UBERON:0007023,1.32e-13,114;UBERON:0003075,6.82e-13,82;UBERON:0007284,6.82e-13,82;UBERON:0002346,6.83e-13,86;UBERON:0003528,8.82e-13,34;UBERON:0002020,8.82e-13,34;UBERON:0001869,1.04e-12,32;UBERON:0001893,1.59e-12,34;UBERON:0002791,3.10e-12,32;UBERON:0003056,8.17e-12,61;UBERON:0000956,3.33e-10,25;UBERON:0000203,3.33e-10,25;UBERON:0002619,8.61e-10,22;UBERON:0001950,4.30e-09,20;UBERON:0010371,1.96e-07,104;UBERON:0000178,2.23e-07,15;UBERON:0000179,2.23e-07,15;UBERON:0000463,2.23e-07,15;UBERON:0010314,7.03e-07,132 | |||
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| |||
|short_description=p3@TOPORS | |||
}} |
Latest revision as of 02:37, 17 September 2015
Short description: | p3@TOPORS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TOPORS_5end |
Coexpression cluster: | C1725_Neutrophils_Eosinophils_Mast_CD8_Natural_CD4_cord |
Association with transcript: | -20bp_to_U82939_5end |
EntrezGene: | TOPORS |
HGNC: | 21653 |
UniProt: | Q9NS56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.01e-16 | 53 |
common lymphoid progenitor | 1.01e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.35e-16 | 52 |
mature alpha-beta T cell | 3.18e-11 | 18 |
alpha-beta T cell | 3.18e-11 | 18 |
immature T cell | 3.18e-11 | 18 |
mature T cell | 3.18e-11 | 18 |
immature alpha-beta T cell | 3.18e-11 | 18 |
T cell | 2.96e-10 | 25 |
pro-T cell | 2.96e-10 | 25 |
leukocyte | 2.22e-09 | 136 |
B cell | 7.13e-08 | 14 |
CD8-positive, alpha-beta T cell | 3.53e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.85e-22 | 89 |
central nervous system | 8.76e-22 | 81 |
neural tube | 7.19e-17 | 56 |
neural rod | 7.19e-17 | 56 |
future spinal cord | 7.19e-17 | 56 |
neural keel | 7.19e-17 | 56 |
brain | 8.36e-17 | 68 |
future brain | 8.36e-17 | 68 |
regional part of nervous system | 3.93e-16 | 53 |
regional part of brain | 3.93e-16 | 53 |
regional part of forebrain | 4.16e-15 | 41 |
forebrain | 4.16e-15 | 41 |
anterior neural tube | 4.16e-15 | 41 |
future forebrain | 4.16e-15 | 41 |
adult organism | 1.32e-13 | 114 |
neural plate | 6.82e-13 | 82 |
presumptive neural plate | 6.82e-13 | 82 |
neurectoderm | 6.83e-13 | 86 |
brain grey matter | 8.82e-13 | 34 |
gray matter | 8.82e-13 | 34 |
cerebral hemisphere | 1.04e-12 | 32 |
telencephalon | 1.59e-12 | 34 |
regional part of telencephalon | 3.10e-12 | 32 |
pre-chordal neural plate | 8.17e-12 | 61 |
cerebral cortex | 3.33e-10 | 25 |
pallium | 3.33e-10 | 25 |
regional part of cerebral cortex | 8.61e-10 | 22 |
neocortex | 4.30e-09 | 20 |
ecto-epithelium | 1.96e-07 | 104 |
blood | 2.23e-07 | 15 |
haemolymphatic fluid | 2.23e-07 | 15 |
organism substance | 2.23e-07 | 15 |
structure with developmental contribution from neural crest | 7.03e-07 | 132 |