FFCP PHASE1:Hg19::chr3:184097836..184097851,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8646 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1949 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H2X0 | |||
|association_with_transcript=-9bp_to_ENST00000204604,ENST00000310236,ENST00000356534,ENST00000420973,ENST00000448472,ENST00000460627,NM_003741,uc003fov.2,uc003fow.2,uc003fox.2,uc003foy.2_5end | |||
|cluster_id=chr3:184097836..184097851,+ | |||
|description=CAGE_peak_4_at_CHRD_5end | |||
|id=chr3:184097836..184097851,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002603;2.55e-11;3!CL:0002575;3.43e-09;2!CL:0002549;1.23e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,1.72e-11,3;CL:0002575,3.31e-09,2;CL:0002549,1.80e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.25e-11;3!UBERON:0003057;1.25e-11;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.11e-34!115;UBERON:0001017!1.30e-19!82;UBERON:0005743!8.30e-19!86;UBERON:0001049!1.52e-18!57;UBERON:0005068!1.52e-18!57;UBERON:0006241!1.52e-18!57;UBERON:0007135!1.52e-18!57;UBERON:0002616!2.57e-17!59;UBERON:0000073!3.79e-17!94;UBERON:0001016!3.79e-17!94;UBERON:0003075!4.44e-17!86;UBERON:0007284!4.44e-17!86;UBERON:0000955!1.28e-15!69;UBERON:0006238!1.28e-15!69;UBERON:0002346!1.50e-15!90;UBERON:0003076!7.77e-12!15;UBERON:0003057!7.77e-12!15;UBERON:0000062!1.73e-10!511;UBERON:0004732!6.67e-10!13;UBERON:0003080!1.13e-09!42;UBERON:0002619!1.17e-09!22;UBERON:0001893!1.44e-09!34;UBERON:0002020!1.52e-09!34;UBERON:0003528!1.52e-09!34;UBERON:0002791!4.13e-09!33;UBERON:0002780!4.32e-09!41;UBERON:0001890!4.32e-09!41;UBERON:0006240!4.32e-09!41;UBERON:0004733!5.69e-09!12;UBERON:0002028!5.69e-09!12;UBERON:0007277!5.69e-09!12;UBERON:0001869!6.75e-09!32;UBERON:0004121!9.55e-09!169;UBERON:0001950!2.18e-08!20;UBERON:0000475!2.92e-08!365;UBERON:0000924!3.91e-08!173;UBERON:0006601!3.91e-08!173;UBERON:0000956!6.77e-08!25;UBERON:0000203!6.77e-08!25;UBERON:0000033!8.19e-08!123;UBERON:0000153!1.08e-07!129;UBERON:0007811!1.08e-07!129;UBERON:0002417!2.82e-07!61;UBERON:0000916!2.82e-07!61;UBERON:0000025!5.92e-07!194;UBERON:0000477!7.69e-07!286;UBERON:0002680!7.96e-07!9;UBERON:0001895!7.96e-07!9;UBERON:0010092!7.96e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.84e-15;6!UBERON:0004151;1.04e-11;3!UBERON:0002240;1.25e-11;3!UBERON:0005174;1.25e-11;3!UBERON:0001137;1.25e-11;3!UBERON:0002680;6.18e-10;9!UBERON:0001895;6.18e-10;9!UBERON:0004732;1.71e-09;13!UBERON:0005629;1.23e-08;2!UBERON:0005358;1.23e-08;2!UBERON:0001886;1.23e-08;2!UBERON:0004086;1.23e-08;2!UBERON:0005282;1.23e-08;2!UBERON:0005281;1.23e-08;2!UBERON:0002081;1.69e-08;2!UBERON:0004733;2.25e-07;12!UBERON:0002028;2.25e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.35e-15,6;UBERON:0006215,3.35e-15,6;UBERON:0003076,1.60e-14,15;UBERON:0003057,1.60e-14,15;UBERON:0002240,7.65e-12,3;UBERON:0004151,7.65e-12,3;UBERON:0005174,7.65e-12,3;UBERON:0001137,7.65e-12,3;UBERON:0002680,4.87e-10,9;UBERON:0001895,4.87e-10,9;UBERON:0010092,4.87e-10,9;UBERON:0004732,1.28e-09,13;UBERON:0002081,1.23e-08,2;UBERON:0010227,1.23e-08,2;UBERON:0005629,1.80e-08,2;UBERON:0005358,1.80e-08,2;UBERON:0001886,1.80e-08,2;UBERON:0004086,1.80e-08,2;UBERON:0005282,1.80e-08,2;UBERON:0005281,1.80e-08,2;UBERON:0007023,3.43e-08,114;UBERON:0004733,1.89e-07,12;UBERON:0002028,1.89e-07,12;UBERON:0007277,1.89e-07,12 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0,0.331397375727916,0,0,0,0,1.35433163884467,1.22400414746552,1.56727360739044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,3.53643503843824,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.49333509683432,0,0,0,1.05950199351452,6.33793516927999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,5.07020139287323,0.982827216677626,4.13552934676983,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0.24538298343828,0,0,0.831883446123229,0,0.315404830067869,0.35142424497814,0,0,1.03473071292505,0,0,0,4.89502893656851,11.3237329857582,0,0,0,0,0,0,0,0.153461973288062,0.561320188866147,0.768834895534206,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.409499734223957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0.422215270595328,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0,0,0.994147647766298,0.562677665642051,1.8922479853894,0.16480387422676,0.63337622438398,0.996239941255349,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,1.99613798001194,0.520855522170466,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,1.3269511191747,3.54657142744257,0.658156191461918,0,0,2.77020930613669,0,0.46112780877612,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.176915129006678,0,0,0,0,0.202203398942031,2.40773294189637,0,0,0,0.242780379534093,0.394584402849391,0,0.30607276163049,6.50821770173426,0.150323419414493,0.103688191397247,0,0,0,0,0,0.277349346026277,0.347119476670262,0,0,1.04836000945218,0,0.0967563312890851,0.0730893170861856,0.246346371159628,0.678923115418936,0.353024506766001,0.451961481561065,0,0,0.379864775735272,0.586654148204409,0,0.426905989478705,1.39866726707491,0,0,8.40815489523626,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,1.3749625440701,3.58936512288407,0.599037001496973,0,0.223171457441873,0.335917362433631,0,1.16495949527454,1.18174773460835,0.988990300573997,0.808842526250219,0.295282444544246,0,1.59045937961861,0.272406812223151,0.643012593860077,0,0,0,0,0.242998226632099,0.335434687599266,8.747433510211,3.25218446436988,0.105600336519406,0,0,1.42939065274673,1.32418394073086,1.017074150619,0,0,0,0,0,0,0,0.732761168390412,6.62534444561107,0.387848869084652,0.13223260174269,0,0,0.213574825135389,0.943225830597996,0,1.48849806543585,0,0,0,1.08803560673895,0.2506898940227,0,0,5.9680556575089,0,0.244052529803926,0.3755727921195,0.573409195690071,0.665574309221114,0.683060432355218,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,1.39736661188633,0,0.265841714557995,1.04349012362347,0,0,0,0,0.859284456339908,0,0.398095888698616,0,0,0,1.26184898228651,0.385239660814607,0.214441591374926,0,0,0,0,0,2.77921302444875,0,0.176689145945881,0.192914038270915,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.385375350578757,0,0.798169295285756,0.205116364240755,0.252071696221718,0.553258019713743,0.645902582527404,1.42769420259154,0,0,0,0,0,0,0,1.20336525358812,0,0,0,0,0,0.337687923091973,1.56215619722769,0.826747186004736,0.507326481551255,0,0,1.48863353516788,0,0,0,0.672567444437648,0,0.227662191351298,0.443511850813194,0.115233987555779,0,0.883606528698812,0.394636641377094,0,0,0.470958557103084,0.314231179832004,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0.22910686854405,0,0,7.49431393045209,0,0,0,0,0,1.45713297917742,0.233939463462106,0.596852325484105,0.118920090777569,0,0,0.603851374266694,0.231522474323834,0,0,0.490296643507811,0.707029641304878,2.74831853960923,1.78227840196252,1.2679671827502,0.169927114687817,0.563903507879121,0.644578879735772,0,0,0,0,0.730336388246517,0.917458566809082,0.143339583151451,0,0.339957450954573,0.436350690340377,0,0,0.462175628631418,0,0,0,1.0135880080915,0.101988829741982,0.534434810531121,0.18378979906969,0.50141507858475,0.378893491091197,0.267964130156178,0,0.20686599172379,0.213233981900981,0.476128862927481,0,0,0,0.636471582781649,0.202117188958219,1.08858373948481,0.684466602170562,0.134704106029175,0.717222053926764,0.665320713092027,0,0,0,0,2.34640942403454,2.32258743947446,4.47585796147312,0.665756774185513,0.402547587182052,0 | |||
|short_description=p4@CHRD | |||
}} |
Latest revision as of 02:31, 17 September 2015
Short description: | p4@CHRD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CHRD_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENST00000204604, ENST00000310236, ENST00000356534, ENST00000420973, ENST00000448472, ENST00000460627, NM_003741, uc003fov.2, uc003fow.2, uc003fox.2, uc003foy.2_5end |
EntrezGene: | CHRD |
HGNC: | 1949 |
UniProt: | Q9H2X0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 1.72e-11 | 3 |
central nervous system pericyte | 3.31e-09 | 2 |
fibroblast of choroid plexus | 1.80e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.35e-15 | 6 |
rhombic lip | 3.35e-15 | 6 |
posterior neural tube | 1.60e-14 | 15 |
chordal neural plate | 1.60e-14 | 15 |
spinal cord | 7.65e-12 | 3 |
cardiac chamber | 7.65e-12 | 3 |
dorsal region element | 7.65e-12 | 3 |
dorsum | 7.65e-12 | 3 |
regional part of metencephalon | 4.87e-10 | 9 |
metencephalon | 4.87e-10 | 9 |
future metencephalon | 4.87e-10 | 9 |
segmental subdivision of nervous system | 1.28e-09 | 13 |
cardiac atrium | 1.23e-08 | 2 |
future cardiac atrium | 1.23e-08 | 2 |
vascular plexus | 1.80e-08 | 2 |
ventricle of nervous system | 1.80e-08 | 2 |
choroid plexus | 1.80e-08 | 2 |
brain ventricle | 1.80e-08 | 2 |
ventricular system of brain | 1.80e-08 | 2 |
ventricular system of central nervous system | 1.80e-08 | 2 |
adult organism | 3.43e-08 | 114 |
segmental subdivision of hindbrain | 1.89e-07 | 12 |
hindbrain | 1.89e-07 | 12 |
presumptive hindbrain | 1.89e-07 | 12 |