FFCP PHASE1:Hg19::chr3:184018352..184018374,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5708 | |EntrezGene=5708 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9559 | |HGNC=9559 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCS3,E7EW34 | |UniProt=E9PCS3,E7EW34 | ||
|association_with_transcript=0bp_to_ENST00000435761,ENST00000439383,ENST00000463602,uc011brj.1,uc011brk.1_5end | |association_with_transcript=0bp_to_ENST00000435761,ENST00000439383,ENST00000463602,uc011brj.1,uc011brk.1_5end | ||
|cluster_id=chr3:184018352..184018374,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_3_at_PSMD2_5end | |description=CAGE_peak_3_at_PSMD2_5end | ||
|id=chr3:184018352..184018374,+ | |id=chr3:184018352..184018374,+ | ||
|ontology_enrichment_celltype=CL:0000220!3.18e-16!246;CL:0002321!6.91e-16!248;CL:0000359!1.12e-11!32;CL:0000066!4.31e-11!254;CL:0000680!9.51e-09!57;CL:0000056!9.51e-09!57;CL:0000355!9.51e-09!57;CL:0002368!1.57e-08!13;CL:0000192!2.23e-08!42;CL:0000514!2.23e-08!42;CL:0000548!6.38e-08!679;CL:0000004!6.38e-08!679;CL:0000255!6.38e-08!679;CL:0000012!1.06e-07!682;CL:0000183!3.71e-07!59;CL:0000187!5.70e-07!54;CL:0000222!6.35e-07!119;CL:0000393!6.77e-07!60;CL:0000211!6.77e-07!60;CL:0000055!7.53e-07!180 | |ontology_enrichment_celltype=CL:0000220!3.18e-16!246;CL:0002321!6.91e-16!248;CL:0000359!1.12e-11!32;CL:0000066!4.31e-11!254;CL:0000680!9.51e-09!57;CL:0000056!9.51e-09!57;CL:0000355!9.51e-09!57;CL:0002368!1.57e-08!13;CL:0000192!2.23e-08!42;CL:0000514!2.23e-08!42;CL:0000548!6.38e-08!679;CL:0000004!6.38e-08!679;CL:0000255!6.38e-08!679;CL:0000012!1.06e-07!682;CL:0000183!3.71e-07!59;CL:0000187!5.70e-07!54;CL:0000222!6.35e-07!119;CL:0000393!6.77e-07!60;CL:0000211!6.77e-07!60;CL:0000055!7.53e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.86e-15;32!CL:0002621;2.86e-13;3!CL:0002166;3.87e-13;3!CL:0002592;3.49e-12;3!CL:0002368;4.91e-10;13!CL:0000244;7.15e-10;4!CL:0000731;7.15e-10;4!CL:0002159;8.66e-10;14!CL:0002594;3.00e-09;4!CL:0000192;5.89e-09;43!CL:0002589;1.43e-08;2!CL:0002595;2.79e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.66e-17,32;CL:0002621,2.60e-13,3;CL:0002166,2.93e-13,3;CL:0002592,3.24e-12,3;CL:0000192,4.87e-12,43;CL:0000514,4.87e-12,43;CL:0002321,1.19e-10,250;CL:0002368,5.01e-10,13;CL:0000244,6.46e-10,4;CL:0000731,6.46e-10,4;CL:0002159,8.35e-10,14;CL:0000680,1.14e-09,58;CL:0000056,1.14e-09,58;CL:0000355,1.14e-09,58;CL:0002594,2.02e-09,4;CL:0000187,8.27e-09,55;CL:0002589,1.46e-08,2;CL:0000393,1.11e-07,61;CL:0000211,1.11e-07,61;CL:0002076,1.70e-07,42;CL:0002595,3.52e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;5.89e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.00e-12;3!DOID:127;1.00e-12;3!DOID:0060072;1.19e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.01e-12,3;DOID:127,1.01e-12,3;DOID:0060072,1.20e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.05e-13!42;UBERON:0003509!1.05e-13!42;UBERON:0004572!1.05e-13!42;UBERON:0001981!1.05e-09!60;UBERON:0007500!1.05e-09!60;UBERON:0004537!1.05e-09!60;UBERON:0006965!1.05e-09!60;UBERON:0004573!1.30e-09!33;UBERON:0004571!1.30e-09!33;UBERON:0000486!2.21e-09!82;UBERON:0003914!5.69e-09!118;UBERON:0000055!5.48e-08!69;UBERON:0000490!7.37e-08!138;UBERON:0001134!1.12e-07!61;UBERON:0002036!1.12e-07!61;UBERON:0003082!1.12e-07!61;UBERON:0002049!1.33e-07!79;UBERON:0007798!1.33e-07!79;UBERON:0004872!2.15e-07!84;UBERON:0002385!3.34e-07!63;UBERON:0001015!3.34e-07!63;UBERON:0000383!3.34e-07!63;UBERON:0002100!4.90e-07!216;UBERON:0005256!6.56e-07!143;UBERON:0000914!7.51e-07!83;UBERON:0002329!7.51e-07!83;UBERON:0003077!7.51e-07!83;UBERON:0003059!7.51e-07!83;UBERON:0007282!7.51e-07!83;UBERON:0009618!7.51e-07!83;UBERON:0007285!7.51e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.86e-13;3!UBERON:0003498;3.49e-12;3!UBERON:0005985;3.49e-12;3!UBERON:0001621;3.49e-12;3!UBERON:0000486;6.54e-12;12!UBERON:0001708;5.89e-10;4!UBERON:0008895;5.89e-10;4!UBERON:0001637;2.00e-09;42!UBERON:0003509;2.00e-09;42!UBERON:0004572;2.00e-09;42!UBERON:0001310;3.00e-09;4!UBERON:0001529;1.43e-08;2!UBERON:0007204;1.43e-08;2!UBERON:0011159;4.88e-08;5!UBERON:0000365;5.68e-08;5!UBERON:0004573;8.90e-08;33!UBERON:0004571;8.90e-08;33!UBERON:0003834;2.79e-07;5!UBERON:0001533;2.79e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.94e-15,83;UBERON:0001949,2.60e-13,3;UBERON:0001637,2.16e-12,42;UBERON:0003509,2.16e-12,42;UBERON:0004572,2.16e-12,42;UBERON:0001621,3.24e-12,3;UBERON:0001708,4.80e-10,4;UBERON:0008895,4.80e-10,4;UBERON:0004573,1.68e-09,33;UBERON:0004571,1.68e-09,33;UBERON:0007500,2.00e-09,59;UBERON:0001981,2.00e-09,59;UBERON:0004537,2.00e-09,59;UBERON:0006965,2.00e-09,59;UBERON:0001310,2.02e-09,4;UBERON:0001134,7.51e-09,62;UBERON:0002036,7.51e-09,62;UBERON:0003082,7.51e-09,62;UBERON:0002329,1.46e-08,71;UBERON:0003059,1.46e-08,71;UBERON:0007282,1.46e-08,71;UBERON:0004290,1.46e-08,71;UBERON:0009618,1.46e-08,71;UBERON:0001529,1.46e-08,2;UBERON:0007204,1.46e-08,2;UBERON:0002385,1.76e-08,64;UBERON:0001015,1.76e-08,64;UBERON:0000383,1.76e-08,64;UBERON:0003077,2.13e-08,72;UBERON:0007285,2.13e-08,72;UBERON:0007524,3.07e-08,73;UBERON:0011159,4.15e-08,5;UBERON:0000365,5.25e-08,5;UBERON:0000055,8.68e-08,68;UBERON:0007503,1.65e-07,78;UBERON:0003498,1.69e-07,5;UBERON:0005985,1.69e-07,5;UBERON:0003834,3.52e-07,5;UBERON:0001533,3.52e-07,5;UBERON:0004872,8.02e-07,83;UBERON:0010188,8.21e-07,6;UBERON:0002539,8.21e-07,6;UBERON:0008816,8.21e-07,6;UBERON:0005910,9.95e-07,6 | |||
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| ||
|short_description=p3@PSMD2 | |short_description=p3@PSMD2 | ||
}} | }} |
Latest revision as of 01:49, 17 September 2015
Short description: | p3@PSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PSMD2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | 0bp_to_ENST00000435761, ENST00000439383, ENST00000463602, uc011brj.1, uc011brk.1_5end |
EntrezGene: | PSMD2 |
HGNC: | 9559 |
UniProt: | E9PCS3E7EW34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.66e-17 | 32 |
gingival epithelial cell | 2.60e-13 | 3 |
epithelial cell of Malassez | 2.93e-13 | 3 |
smooth muscle cell of the coronary artery | 3.24e-12 | 3 |
smooth muscle cell | 4.87e-12 | 43 |
smooth muscle myoblast | 4.87e-12 | 43 |
embryonic cell | 1.19e-10 | 250 |
respiratory epithelial cell | 5.01e-10 | 13 |
transitional epithelial cell | 6.46e-10 | 4 |
urothelial cell | 6.46e-10 | 4 |
general ecto-epithelial cell | 8.35e-10 | 14 |
muscle precursor cell | 1.14e-09 | 58 |
myoblast | 1.14e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.14e-09 | 58 |
smooth muscle cell of the umbilical artery | 2.02e-09 | 4 |
muscle cell | 8.27e-09 | 55 |
smooth muscle cell of the brachiocephalic vasculature | 1.46e-08 | 2 |
electrically responsive cell | 1.11e-07 | 61 |
electrically active cell | 1.11e-07 | 61 |
endo-epithelial cell | 1.70e-07 | 42 |
smooth muscle cell of the subclavian artery | 3.52e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.01e-12 | 3 |
leiomyoma | 1.01e-12 | 3 |
benign neoplasm | 1.20e-09 | 4 |