FFCP PHASE1:Hg19::chr17:66951474..66951550,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:66951474..66951550,- to FFCP PHASE1:Hg19::chr17:66951474..66951550,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10351 | |EntrezGene=10351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=38 | |HGNC=38 | ||
|TSSclassifier=strong | |||
|UniProt=O94911,Q49AI9 | |UniProt=O94911,Q49AI9 | ||
|association_with_transcript=0bp_to_ENST00000269080,ENST00000428549,ENST00000542396,NM_007168,uc002jhp.2,uc002jhq.2,uc002jhr.2,uc002jhs.2,uc002jht.2,uc010wqq.1,uc010wqr.1_5end | |||
|cluster_id=chr17:66951474..66951550,- | |||
|coexpression_cluster_id=C2431 | |||
|description=CAGE_peak_1_at_ABCA8_5end | |||
|id=chr17:66951474..66951550,- | |||
|ontology_enrichment_celltype=CL:0000680!1.84e-10!57;CL:0000056!1.84e-10!57;CL:0000355!1.84e-10!57;CL:0000187!8.46e-10!54;CL:0000055!8.94e-09!180;CL:0000183!2.93e-08!59;CL:0000192!7.85e-08!42;CL:0000514!7.85e-08!42;CL:0000393!8.35e-08!60;CL:0000211!8.35e-08!60;CL:0000359!3.83e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.29e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.17e-11,58;CL:0000056,3.17e-11,58;CL:0000355,3.17e-11,58;CL:0000187,1.65e-10,55;CL:0000192,2.20e-08,43;CL:0000514,2.20e-08,43;CL:0000393,5.45e-08,61;CL:0000211,5.45e-08,61;CL:0000359,3.31e-07,32 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.59e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.95e-44!115;UBERON:0000477!1.24e-26!286;UBERON:0002616!4.78e-25!59;UBERON:0001049!1.45e-24!57;UBERON:0005068!1.45e-24!57;UBERON:0006241!1.45e-24!57;UBERON:0007135!1.45e-24!57;UBERON:0004111!2.28e-23!241;UBERON:0000025!2.96e-23!194;UBERON:0000481!1.65e-22!347;UBERON:0000955!7.18e-20!69;UBERON:0006238!7.18e-20!69;UBERON:0003075!1.27e-19!86;UBERON:0007284!1.27e-19!86;UBERON:0000119!1.61e-19!312;UBERON:0001017!1.96e-19!82;UBERON:0000483!5.13e-19!309;UBERON:0002346!5.27e-19!90;UBERON:0003080!7.91e-19!42;UBERON:0000475!8.39e-19!365;UBERON:0005743!1.09e-18!86;UBERON:0002780!3.14e-18!41;UBERON:0001890!3.14e-18!41;UBERON:0006240!3.14e-18!41;UBERON:0000073!1.36e-15!94;UBERON:0001016!1.36e-15!94;UBERON:0000153!1.88e-14!129;UBERON:0007811!1.88e-14!129;UBERON:0000033!3.45e-14!123;UBERON:0002020!6.26e-14!34;UBERON:0003528!6.26e-14!34;UBERON:0001893!9.33e-14!34;UBERON:0002791!2.60e-13!33;UBERON:0004872!9.20e-13!84;UBERON:0002385!1.17e-12!63;UBERON:0001015!1.17e-12!63;UBERON:0000383!1.17e-12!63;UBERON:0001869!2.12e-12!32;UBERON:0003056!2.64e-12!61;UBERON:0000468!4.52e-12!659;UBERON:0007100!5.42e-12!27;UBERON:0001134!6.34e-12!61;UBERON:0002036!6.34e-12!61;UBERON:0003082!6.34e-12!61;UBERON:0000479!4.71e-11!787;UBERON:0000948!1.75e-10!24;UBERON:0005498!1.75e-10!24;UBERON:0004140!1.75e-10!24;UBERON:0009881!1.75e-10!24;UBERON:0004141!1.75e-10!24;UBERON:0003084!1.75e-10!24;UBERON:0007005!1.75e-10!24;UBERON:0004139!1.75e-10!24;UBERON:0004291!1.75e-10!24;UBERON:0004290!2.09e-10!70;UBERON:0002619!3.07e-10!22;UBERON:0002050!8.49e-10!605;UBERON:0005423!8.49e-10!605;UBERON:0000922!8.96e-10!612;UBERON:0000914!9.89e-10!83;UBERON:0002329!9.89e-10!83;UBERON:0003077!9.89e-10!83;UBERON:0003059!9.89e-10!83;UBERON:0007282!9.89e-10!83;UBERON:0009618!9.89e-10!83;UBERON:0007285!9.89e-10!83;UBERON:0000923!1.24e-09!604;UBERON:0005291!1.24e-09!604;UBERON:0006598!1.24e-09!604;UBERON:0002532!1.24e-09!604;UBERON:0004121!1.27e-09!169;UBERON:0000924!1.59e-09!173;UBERON:0006601!1.59e-09!173;UBERON:0001950!3.53e-09!20;UBERON:0000467!8.07e-09!625;UBERON:0000956!8.11e-09!25;UBERON:0000203!8.11e-09!25;UBERON:0000480!1.18e-08!626;UBERON:0003914!1.44e-07!118;UBERON:0000486!1.96e-07!82;UBERON:0001981!2.45e-07!60;UBERON:0007500!2.45e-07!60;UBERON:0004537!2.45e-07!60;UBERON:0006965!2.45e-07!60;UBERON:0000490!2.59e-07!138;UBERON:0002308!5.04e-07!9;UBERON:0000125!5.04e-07!9;UBERON:0003076!6.03e-07!15;UBERON:0003057!6.03e-07!15;UBERON:0002298!6.04e-07!8;UBERON:0001009!6.29e-07!113;UBERON:0000062!6.46e-07!511;UBERON:0001637!7.53e-07!42;UBERON:0003509!7.53e-07!42;UBERON:0004572!7.53e-07!42;UBERON:0005256!9.55e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.06e-13;41!UBERON:0001890;7.06e-13;41!UBERON:0007023;7.38e-13;114!UBERON:0007100;4.82e-12;25!UBERON:0000073;6.00e-12;53!UBERON:0002616;6.00e-12;53!UBERON:0001893;3.94e-11;34!UBERON:0003528;7.62e-11;34!UBERON:0002020;7.62e-11;34!UBERON:0002791;1.46e-10;32!UBERON:0000948;2.01e-10;22!UBERON:0001869;2.35e-10;32!UBERON:0002619;7.33e-10;22!UBERON:0001017;8.89e-10;75!UBERON:0001950;9.77e-09;20!UBERON:0000955;3.82e-08;68!UBERON:0000956;1.05e-07;25!UBERON:0000203;1.05e-07;25!UBERON:0000125;1.84e-07;9!UBERON:0002308;1.84e-07;9!UBERON:0001016;4.15e-07;83!UBERON:0002420;5.01e-07;9!UBERON:0007245;5.01e-07;9!UBERON:0010009;5.01e-07;9!UBERON:0010011;5.01e-07;9!UBERON:0000454;5.01e-07;9!UBERON:0002385;5.12e-07;31!UBERON:0001015;5.12e-07;31!UBERON:0000383;5.12e-07;31 | |||
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|phase1_expression=50.6882678164853,14.9870366723688,38.903415530488,6.00439790118782,19.6662881548007,15.7020934338066,0,13.2661173419635,9.92505387159386,0.982935746006035,0,0.218441372130172,0,14.2331305904054,5.96515276310248,1.34465029290355,3.01347264011988,1.46062018077475,1.95173119516203,2.58554221961255,0.816002764977012,0.626909442956176,0,0.136874425072884,0.87879847716362,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26479403160043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,91.2153169196945,15.5992325449107,1.80719576192283,4.51204119572301,4.77993512570718,1.5905718941022,2.43317435151318,0,0,0.175669571386252,29.2738233737388,0,0,0,0,0,0,0,0,5.56534740626774,4.30117297553062,1.38856200643038,3.39184765154406,5.03399323451887,0.825354125820202,2.08994966536811,0,0,0,0,0.760272105718513,0.24406205754817,0,0,3.92918804449951,2.2452937262617,1.57656072676651,0,0.949265659568129,0.183201743930407,0,0,0,10.933382937297,25.1994718212514,33.1022952033047,78.0195608436773,12.0587249947441,8.97084160227691,9.60740961567345,2.71334303258876,92.4296775137306,29.6363478553314,23.3750521452246,22.09818443616,58.1937683724799,1.64025002283658,0.624320153660641,1.71141546463335,2.24173020827702,2.3486899728753,2.5899671098901,2.10676210053373,36.9519049971357,2.57952066354713,22.6283460774926,4.75201142912821,8.40707559547093,1.82032272387605,0.718618141816238,1.0100166837244,1.62654075833553,11.3596287348515,0.877955241761676,0.30648779579902,12.3195208303409,20.4177929688038,0,2.56268866582281,18.2261434997223,0,0,0.772921620136887,1.67505170698431,5.06328996723799,3.11798416515836,2.01947019395292,13.8995346949872,24.4085545796406,0,0,0.508681776931463,0,0,0,0,0,0,0.414644220061482,0,0,0,0,0,25.0758681137269,24.5439023767659,1.30137480043828,1.34867752062481,1.44606617930089,1.21323370005633,1.74303555273925,1.18635309555548,1.48314438976181,1.56977172100277,1.53898862778556,0,0,6.9967581926338,2.94017422771084,65.912618107352,27.5191620669735,41.9460833743797,0,1.22988438543114,4.80389868835872,0,0,0,0,0.651616610620649,2.07986957055916,0,0,7.74897381956423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0.25248486685276,0,0,0,1.71072446022705,0,0.300343057843917,0.571652865261156,3.02753927732474,6.5394010324992,9.9740068716492,16.4175079012378,3.57656445851882,3.381211010224,3.98907174877306,0,0.771622122786426,1.41849132023278,2.1313774321288,26.7368848140736,14.650783345569,2.46972101034231,0.65147236858747,22.7450847195229,7.91951872933429,40.9957552801037,21.7883364650074,10.497164074116,0,0,0,7.66799537573064,8.04033550838797,4.27910715122155,16.7946315734392,17.8764400618834,4.47652408099739,0,0,0,0,3.81141936333695,2.60279707715243,0,0.502548796003046,0.637938751653163,0.749007023947182,0,0,21.5937025425686,18.5063092792081,8.13795071099207,0.623912584592421,0.178428988797162,0.315404830067869,2.10854546986884,20.4643347814849,2.27407504055985,7.24311499047534,5.97803038681893,1.47495334833363,1.99832313276591,0.587403472388222,1.02943027143257,0,0,0,0,1.66435439510497,0.907170879989041,45.8999444464737,14.8858114089421,10.1037633995906,40.6201103140572,27.632191449602,11.0989205589089,8.90508398669946,3.39261326365842,3.9063579568888,14.8650152384995,10.904343012856,6.50778119375772,0.120859449591622,0.200506470303285,0,6.08516575272416,1.63882051206045,6.16284750309293,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,1.30151357865721,85.2149166326663,0,0,0,0,28.9231073719487,4.25351160485337,4.46740989632469,4.91211759123615,3.44591431211326,15.0388342815583,6.96080130788297,2.04543905798642,5.51998621009772,0,0,0.255225424989168,0,1.39453664789186,50.0551631460718,10.455559052409,24.334652833911,5.32306030317022,11.3091288969759,13.3433437754822,8.1581185442935,24.562452377738,44.9258783100591,18.8723891984587,1.02359116524534,21.8248883897299,30.8657150488159,2.35484592059769,13.130689403582,8.23611089208164,5.06593330086452,6.2676569287728,4.75530963519025,9.26768603725758,0,15.5976633364022,4.22600587027022,15.5609899005104,12.7264888758341,21.4715421578461,17.0923256499298,12.6053405295832,7.89211593456773,1.73632660280006,12.462000288886,6.69604243976923,0.6196469961995,5.91560765317707,17.7830076733024,19.9445553256636,13.1968289048063,5.32141596105897,10.7664894001809,26.0142965438322,0.379473173765715,1.04980416073495,0,0,0,83.6938388905567,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,9.86909035614947,0,84.9747439776985,0,0.111443384277478,0,0,0,0,29.8244294329889,44.7328744185431,0,0,0,39.8495976502139,16.5770349318689,0,0,0.123084805461069,0.311039587661807,0,0,0,51.985074770664,0,8.89095921157095,9.69332746095218,52.6922797559315,0,0,0,54.3749681576095,0,0,3.07303986298317,0,10.2061614684139,0.173624994933292,4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| ||
|short_description=p1@ABCA8 | |||
}} | }} |
Latest revision as of 00:53, 17 September 2015
Short description: | p1@ABCA8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA8_5end |
Coexpression cluster: | C2431_heart_thalamus_substantia_spinal_corpus_globus_ovary |
Association with transcript: | 0bp_to_ENST00000269080, ENST00000428549, ENST00000542396, NM_007168, uc002jhp.2, uc002jhq.2, uc002jhr.2, uc002jhs.2, uc002jht.2, uc010wqq.1, uc010wqr.1_5end |
EntrezGene: | ABCA8 |
HGNC: | 38 |
UniProt: | O94911Q49AI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.17e-11 | 58 |
myoblast | 3.17e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.17e-11 | 58 |
muscle cell | 1.65e-10 | 55 |
smooth muscle cell | 2.20e-08 | 43 |
smooth muscle myoblast | 2.20e-08 | 43 |
electrically responsive cell | 5.45e-08 | 61 |
electrically active cell | 5.45e-08 | 61 |
vascular associated smooth muscle cell | 3.31e-07 | 32 |