FFCP PHASE1:Hg19::chr1:24829340..24829375,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:24829340..24829375,+ to FFCP PHASE1:Hg19::chr1:24829340..24829375,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11123 | |EntrezGene=11123 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3042 | |HGNC=3042 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKA8,E5L4P0 | |UniProt=Q9UKA8,E5L4P0 | ||
|association_with_transcript=-11bp_to_ENST00000374395,ENST00000436717,NM_001251977,NM_001251981,NM_001251983,NM_013441,uc001bjj.2_5end | |||
|cluster_id=chr1:24829340..24829375,+ | |||
|coexpression_cluster_id=C1473 | |||
|description=CAGE_peak_4_at_RCAN3_5end | |||
|id=chr1:24829340..24829375,+ | |||
|ontology_enrichment_celltype=CL:0000791!8.02e-12!18;CL:0000789!8.02e-12!18;CL:0002420!8.02e-12!18;CL:0002419!8.02e-12!18;CL:0000790!8.02e-12!18;CL:0000084!1.82e-09!25;CL:0000827!1.82e-09!25;CL:0000838!3.82e-08!52;CL:0000625!5.52e-08!11;CL:0000542!8.19e-08!53;CL:0000051!8.19e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.33e-13;18!CL:0000789;1.33e-13;18!CL:0002419;1.33e-13;18!CL:0000084;1.31e-10;25!CL:0000625;3.66e-09;11!CL:0000542;6.28e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.09e-13,18;CL:0000789,1.09e-13,18;CL:0002420,1.09e-13,18;CL:0002419,1.09e-13,18;CL:0000790,1.09e-13,18;CL:0000838,6.92e-11,52;CL:0000542,2.21e-10,53;CL:0000051,2.21e-10,53;CL:0000084,3.05e-10,25;CL:0000827,3.05e-10,25;CL:0000625,3.72e-09,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.33e-13;18!CL:0000051;6.28e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.15e-18!115;UBERON:0001049!2.69e-12!57;UBERON:0005068!2.69e-12!57;UBERON:0006241!2.69e-12!57;UBERON:0007135!2.69e-12!57;UBERON:0001017!1.62e-11!82;UBERON:0005743!1.98e-11!86;UBERON:0000153!4.38e-11!129;UBERON:0007811!4.38e-11!129;UBERON:0002616!3.06e-10!59;UBERON:0003075!7.61e-10!86;UBERON:0007284!7.61e-10!86;UBERON:0000955!1.09e-09!69;UBERON:0006238!1.09e-09!69;UBERON:0000073!1.23e-09!94;UBERON:0001016!1.23e-09!94;UBERON:0000033!1.62e-09!123;UBERON:0002346!3.64e-09!90;UBERON:0004121!7.01e-09!169;UBERON:0000924!1.71e-08!173;UBERON:0006601!1.71e-08!173;UBERON:0003080!1.99e-07!42;UBERON:0002780!3.11e-07!41;UBERON:0001890!3.11e-07!41;UBERON:0006240!3.11e-07!41;UBERON:0000064!4.96e-07!219;UBERON:0003076!9.02e-07!15;UBERON:0003057!9.02e-07!15;UBERON:0003056!9.96e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;8.43e-08;53!UBERON:0002616;8.43e-08;53!UBERON:0004732;8.76e-08;13!UBERON:0004733;4.90e-07;12!UBERON:0002028;4.90e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.69e-19,114;UBERON:0001049,2.67e-13,56;UBERON:0005068,2.67e-13,56;UBERON:0006241,2.67e-13,56;UBERON:0007135,2.67e-13,56;UBERON:0000073,2.34e-12,53;UBERON:0002616,2.34e-12,53;UBERON:0001017,2.77e-12,81;UBERON:0001016,3.66e-11,89;UBERON:0003075,3.73e-11,82;UBERON:0007284,3.73e-11,82;UBERON:0011216,4.77e-11,223;UBERON:0000955,1.32e-10,68;UBERON:0006238,1.32e-10,68;UBERON:0002346,2.52e-10,86;UBERON:0010371,3.41e-10,104;UBERON:0004121,2.77e-08,171;UBERON:0000924,2.77e-08,171;UBERON:0006601,2.77e-08,171;UBERON:0003076,1.00e-07,15;UBERON:0003057,1.00e-07,15;UBERON:0002780,1.13e-07,41;UBERON:0001890,1.13e-07,41;UBERON:0003080,1.13e-07,41;UBERON:0006240,1.13e-07,41;UBERON:0004732,1.48e-07,13;UBERON:0003056,2.33e-07,61;UBERON:0004733,8.08e-07,12;UBERON:0002028,8.08e-07,12;UBERON:0007277,8.08e-07,12 | |||
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| ||
|short_description=p4@RCAN3 | |||
}} | }} |
Latest revision as of 00:43, 17 September 2015
Short description: | p4@RCAN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RCAN3_5end |
Coexpression cluster: | C1473_CD4_cerebellum_thymus_neuroblastoma_CD8_Peripheral_caudate |
Association with transcript: | -11bp_to_ENST00000374395, ENST00000436717, NM_001251977, NM_001251981, NM_001251983, NM_013441, uc001bjj.2_5end |
EntrezGene: | RCAN3 |
HGNC: | 3042 |
UniProt: | Q9UKA8E5L4P0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.09e-13 | 18 |
alpha-beta T cell | 1.09e-13 | 18 |
immature T cell | 1.09e-13 | 18 |
mature T cell | 1.09e-13 | 18 |
immature alpha-beta T cell | 1.09e-13 | 18 |
lymphoid lineage restricted progenitor cell | 6.92e-11 | 52 |
lymphocyte | 2.21e-10 | 53 |
common lymphoid progenitor | 2.21e-10 | 53 |
T cell | 3.05e-10 | 25 |
pro-T cell | 3.05e-10 | 25 |
CD8-positive, alpha-beta T cell | 3.72e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.69e-19 | 114 |
neural tube | 2.67e-13 | 56 |
neural rod | 2.67e-13 | 56 |
future spinal cord | 2.67e-13 | 56 |
neural keel | 2.67e-13 | 56 |
regional part of nervous system | 2.34e-12 | 53 |
regional part of brain | 2.34e-12 | 53 |
central nervous system | 2.77e-12 | 81 |
nervous system | 3.66e-11 | 89 |
neural plate | 3.73e-11 | 82 |
presumptive neural plate | 3.73e-11 | 82 |
organ system subdivision | 4.77e-11 | 223 |
brain | 1.32e-10 | 68 |
future brain | 1.32e-10 | 68 |
neurectoderm | 2.52e-10 | 86 |
ecto-epithelium | 3.41e-10 | 104 |
ectoderm-derived structure | 2.77e-08 | 171 |
ectoderm | 2.77e-08 | 171 |
presumptive ectoderm | 2.77e-08 | 171 |
posterior neural tube | 1.00e-07 | 15 |
chordal neural plate | 1.00e-07 | 15 |
regional part of forebrain | 1.13e-07 | 41 |
forebrain | 1.13e-07 | 41 |
anterior neural tube | 1.13e-07 | 41 |
future forebrain | 1.13e-07 | 41 |
segmental subdivision of nervous system | 1.48e-07 | 13 |
pre-chordal neural plate | 2.33e-07 | 61 |
segmental subdivision of hindbrain | 8.08e-07 | 12 |
hindbrain | 8.08e-07 | 12 |
presumptive hindbrain | 8.08e-07 | 12 |