FFCP PHASE1:Hg19::chr8:145066471..145066503,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2907 | |EntrezGene=2907 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4589 | |HGNC=4589 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=129bp_to_ENST00000533377_5end | |association_with_transcript=129bp_to_ENST00000533377_5end | ||
|cluster_id=chr8:145066471..145066503,+ | |||
|description=CAGE_peak_10_at_GRINA_5end | |description=CAGE_peak_10_at_GRINA_5end | ||
|id=chr8:145066471..145066503,+ | |id=chr8:145066471..145066503,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.70e-15!42;CL:0002194!2.18e-13!63;CL:0000576!2.18e-13!63;CL:0000040!2.18e-13!63;CL:0000559!2.18e-13!63;CL:0000860!3.03e-13!45;CL:0002009!1.34e-12!65;CL:0000839!5.98e-11!70;CL:0000557!3.08e-10!71;CL:0000766!3.25e-10!76 | |ontology_enrichment_celltype=CL:0002057!1.70e-15!42;CL:0002194!2.18e-13!63;CL:0000576!2.18e-13!63;CL:0000040!2.18e-13!63;CL:0000559!2.18e-13!63;CL:0000860!3.03e-13!45;CL:0002009!1.34e-12!65;CL:0000839!5.98e-11!70;CL:0000557!3.08e-10!71;CL:0000766!3.25e-10!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.11e-18;33!CL:0002057;1.11e-18;33!CL:0000473;1.81e-16;39!CL:0000234;1.81e-16;39!CL:0000576;4.98e-12;48!CL:0000766;1.70e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.89e-20,48;CL:0000234,2.89e-20,48;CL:0000860,7.81e-19,42;CL:0002057,7.81e-19,42;CL:0002194,2.82e-16,59;CL:0000576,2.82e-16,59;CL:0000040,2.82e-16,59;CL:0000559,2.82e-16,59;CL:0002009,3.05e-15,61;CL:0000839,5.79e-13,66;CL:0000557,1.48e-12,67;CL:0000766,2.20e-12,72 | |||
|ontology_enrichment_development_v019=CL:0002057;2.51e-14;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.77e-09!659;UBERON:0002371!1.59e-08!80;UBERON:0000922!5.62e-08!612;UBERON:0000923!1.38e-07!604;UBERON:0005291!1.38e-07!604;UBERON:0006598!1.38e-07!604;UBERON:0002532!1.38e-07!604;UBERON:0002050!1.47e-07!605;UBERON:0005423!1.47e-07!605;UBERON:0004765!1.53e-07!101;UBERON:0001434!1.53e-07!101;UBERON:0001474!2.08e-07!86;UBERON:0002204!2.52e-07!167;UBERON:0002390!3.10e-07!102;UBERON:0003061!3.10e-07!102 | |ontology_enrichment_uberon=UBERON:0000468!6.77e-09!659;UBERON:0002371!1.59e-08!80;UBERON:0000922!5.62e-08!612;UBERON:0000923!1.38e-07!604;UBERON:0005291!1.38e-07!604;UBERON:0006598!1.38e-07!604;UBERON:0002532!1.38e-07!604;UBERON:0002050!1.47e-07!605;UBERON:0005423!1.47e-07!605;UBERON:0004765!1.53e-07!101;UBERON:0001434!1.53e-07!101;UBERON:0001474!2.08e-07!86;UBERON:0002204!2.52e-07!167;UBERON:0002390!3.10e-07!102;UBERON:0003061!3.10e-07!102 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.49e-11,315;UBERON:0004120,1.49e-11,315;UBERON:0006603,1.49e-11,315;UBERON:0002371,1.11e-10,76;UBERON:0001434,2.18e-09,100;UBERON:0002405,2.94e-09,93;UBERON:0004765,5.40e-09,90;UBERON:0001474,6.73e-09,82;UBERON:0002204,1.17e-08,167;UBERON:0002193,2.19e-08,108;UBERON:0003081,2.45e-08,203;UBERON:0002390,3.40e-08,98;UBERON:0003061,3.40e-08,98;UBERON:0000923,4.43e-07,560;UBERON:0010316,4.43e-07,560;UBERON:0005291,4.43e-07,560;UBERON:0006598,4.43e-07,560;UBERON:0010317,4.43e-07,560;UBERON:0002532,4.43e-07,560;UBERON:0002050,6.27e-07,564 | |||
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| ||
|short_description=p10@GRINA | |short_description=p10@GRINA | ||
}} | }} |
Latest revision as of 00:19, 17 September 2015
Short description: | p10@GRINA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GRINA_5end |
Coexpression cluster: | NA |
Association with transcript: | 129bp_to_ENST00000533377_5end |
EntrezGene: | GRINA |
HGNC: | 4589 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.89e-20 | 48 |
phagocyte | 2.89e-20 | 48 |
classical monocyte | 7.81e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.81e-19 | 42 |
monopoietic cell | 2.82e-16 | 59 |
monocyte | 2.82e-16 | 59 |
monoblast | 2.82e-16 | 59 |
promonocyte | 2.82e-16 | 59 |
macrophage dendritic cell progenitor | 3.05e-15 | 61 |
myeloid lineage restricted progenitor cell | 5.79e-13 | 66 |
granulocyte monocyte progenitor cell | 1.48e-12 | 67 |
myeloid leukocyte | 2.20e-12 | 72 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.49e-11 | 315 |
mesoderm-derived structure | 1.49e-11 | 315 |
presumptive mesoderm | 1.49e-11 | 315 |
bone marrow | 1.11e-10 | 76 |
skeletal system | 2.18e-09 | 100 |
immune system | 2.94e-09 | 93 |
skeletal element | 5.40e-09 | 90 |
bone element | 6.73e-09 | 82 |
musculoskeletal system | 1.17e-08 | 167 |
hemolymphoid system | 2.19e-08 | 108 |
lateral plate mesoderm | 2.45e-08 | 203 |
hematopoietic system | 3.40e-08 | 98 |
blood island | 3.40e-08 | 98 |
germ layer | 4.43e-07 | 560 |
germ layer / neural crest | 4.43e-07 | 560 |
embryonic tissue | 4.43e-07 | 560 |
presumptive structure | 4.43e-07 | 560 |
germ layer / neural crest derived structure | 4.43e-07 | 560 |
epiblast (generic) | 4.43e-07 | 560 |
embryonic structure | 6.27e-07 | 564 |