FFCP PHASE1:Hg19::chr8:145064233..145064278,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2907 | |EntrezGene=2907 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4589 | |HGNC=4589 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z429,E9PPG3 | |UniProt=Q7Z429,E9PPG3 | ||
|association_with_transcript=0bp_to_ENST00000395068,ENST00000529301_5end | |association_with_transcript=0bp_to_ENST00000395068,ENST00000529301_5end | ||
|cluster_id=chr8:145064233..145064278,+ | |||
|description=CAGE_peak_1_at_GRINA_5end | |description=CAGE_peak_1_at_GRINA_5end | ||
|id=chr8:145064233..145064278,+ | |id=chr8:145064233..145064278,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.15e-18!42;CL:0002194!4.26e-15!63;CL:0000576!4.26e-15!63;CL:0000040!4.26e-15!63;CL:0000559!4.26e-15!63;CL:0000766!4.79e-15!76;CL:0000860!8.11e-15!45;CL:0002009!1.15e-14!65;CL:0000839!1.81e-12!70;CL:0000557!2.29e-11!71 | |ontology_enrichment_celltype=CL:0002057!4.15e-18!42;CL:0002194!4.26e-15!63;CL:0000576!4.26e-15!63;CL:0000040!4.26e-15!63;CL:0000559!4.26e-15!63;CL:0000766!4.79e-15!76;CL:0000860!8.11e-15!45;CL:0002009!1.15e-14!65;CL:0000839!1.81e-12!70;CL:0000557!2.29e-11!71 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.19e-17;33!CL:0002057;3.19e-17;33!CL:0000473;1.16e-16;39!CL:0000234;1.16e-16;39!CL:0000576;1.63e-11;48!CL:0000766;1.66e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.55e-21,48;CL:0000234,8.55e-21,48;CL:0000860,4.15e-18,42;CL:0002057,4.15e-18,42;CL:0002194,1.21e-17,59;CL:0000576,1.21e-17,59;CL:0000040,1.21e-17,59;CL:0000559,1.21e-17,59;CL:0000766,2.87e-17,72;CL:0002009,4.18e-17,61;CL:0000839,1.58e-14,66;CL:0000557,2.84e-13,67;CL:0000763,5.38e-07,108;CL:0000049,5.38e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.47e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!8.88e-16!659;UBERON:0000467!2.62e-15!625;UBERON:0000480!3.97e-15!626;UBERON:0000923!1.75e-14!604;UBERON:0005291!1.75e-14!604;UBERON:0006598!1.75e-14!604;UBERON:0002532!1.75e-14!604;UBERON:0002050!2.96e-14!605;UBERON:0005423!2.96e-14!605;UBERON:0000922!2.92e-13!612;UBERON:0002193!5.73e-13!112;UBERON:0002405!7.27e-12!115;UBERON:0002390!1.69e-11!102;UBERON:0003061!1.69e-11!102;UBERON:0003081!2.55e-10!216;UBERON:0002371!2.58e-10!80;UBERON:0001474!7.01e-10!86;UBERON:0004765!3.19e-09!101;UBERON:0001434!3.19e-09!101;UBERON:0002204!3.48e-09!167;UBERON:0004111!2.95e-07!241 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000923,3.12e-15,560;UBERON:0010316,3.12e-15,560;UBERON:0005291,3.12e-15,560;UBERON:0006598,3.12e-15,560;UBERON:0010317,3.12e-15,560;UBERON:0002532,3.12e-15,560;UBERON:0002050,3.73e-15,564;UBERON:0002193,1.63e-14,108;UBERON:0000922,2.32e-13,592;UBERON:0005423,4.05e-13,581;UBERON:0002390,5.21e-13,98;UBERON:0003061,5.21e-13,98;UBERON:0003081,2.37e-12,203;UBERON:0002371,5.87e-12,76;UBERON:0002405,8.04e-12,93;UBERON:0004765,1.91e-11,90;UBERON:0001474,2.12e-11,82;UBERON:0001434,5.99e-11,100;UBERON:0002204,1.13e-10,167;UBERON:0000926,1.26e-09,315;UBERON:0004120,1.26e-09,315;UBERON:0006603,1.26e-09,315;UBERON:0004111,7.48e-07,240 | |||
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| ||
|short_description=p1@GRINA | |short_description=p1@GRINA | ||
}} | }} |
Latest revision as of 00:11, 17 September 2015
Short description: | p1@GRINA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRINA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395068, ENST00000529301_5end |
EntrezGene: | GRINA |
HGNC: | 4589 |
UniProt: | Q7Z429E9PPG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.55e-21 | 48 |
phagocyte | 8.55e-21 | 48 |
classical monocyte | 4.15e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.15e-18 | 42 |
monopoietic cell | 1.21e-17 | 59 |
monocyte | 1.21e-17 | 59 |
monoblast | 1.21e-17 | 59 |
promonocyte | 1.21e-17 | 59 |
myeloid leukocyte | 2.87e-17 | 72 |
macrophage dendritic cell progenitor | 4.18e-17 | 61 |
myeloid lineage restricted progenitor cell | 1.58e-14 | 66 |
granulocyte monocyte progenitor cell | 2.84e-13 | 67 |
myeloid cell | 5.38e-07 | 108 |
common myeloid progenitor | 5.38e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
germ layer | 3.12e-15 | 560 |
germ layer / neural crest | 3.12e-15 | 560 |
embryonic tissue | 3.12e-15 | 560 |
presumptive structure | 3.12e-15 | 560 |
germ layer / neural crest derived structure | 3.12e-15 | 560 |
epiblast (generic) | 3.12e-15 | 560 |
embryonic structure | 3.73e-15 | 564 |
hemolymphoid system | 1.63e-14 | 108 |
embryo | 2.32e-13 | 592 |
developing anatomical structure | 4.05e-13 | 581 |
hematopoietic system | 5.21e-13 | 98 |
blood island | 5.21e-13 | 98 |
lateral plate mesoderm | 2.37e-12 | 203 |
bone marrow | 5.87e-12 | 76 |
immune system | 8.04e-12 | 93 |
skeletal element | 1.91e-11 | 90 |
bone element | 2.12e-11 | 82 |
skeletal system | 5.99e-11 | 100 |
musculoskeletal system | 1.13e-10 | 167 |
mesoderm | 1.26e-09 | 315 |
mesoderm-derived structure | 1.26e-09 | 315 |
presumptive mesoderm | 1.26e-09 | 315 |
anatomical conduit | 7.48e-07 | 240 |