FFCP PHASE1:Hg19::chr20:4982120..4982131,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:4982120..4982131,-
|short_description=p3@SLC23A2
|description=CAGE_peak_3_at_SLC23A2_5end
|association_with_transcript=13bp_to_ENST00000338244,NM_005116,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9962 | |EntrezGene=9962 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10973 | |HGNC=10973 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UGH3 | |UniProt=Q9UGH3 | ||
|association_with_transcript=13bp_to_ENST00000338244,NM_005116,uc002wlg.1,uc002wlj.1,uc010zqr.1_5end | |||
|cluster_id=chr20:4982120..4982131,- | |||
|description=CAGE_peak_3_at_SLC23A2_5end | |||
|id=chr20:4982120..4982131,- | |||
|ontology_enrichment_celltype=CL:0000738!6.03e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.93e-08;39!CL:0000234;4.93e-08;39!CL:0000860;4.05e-07;33!CL:0002057;4.05e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.47e-09,72;CL:0000557,4.63e-08,67;CL:0002194,7.09e-08,59;CL:0000576,7.09e-08,59;CL:0000040,7.09e-08,59;CL:0000559,7.09e-08,59;CL:0000839,8.42e-08,66;CL:0002009,2.64e-07,61;CL:0000473,9.70e-07,48;CL:0000234,9.70e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.94e-18!115;UBERON:0001049!1.82e-15!57;UBERON:0005068!1.82e-15!57;UBERON:0006241!1.82e-15!57;UBERON:0007135!1.82e-15!57;UBERON:0001017!1.88e-13!82;UBERON:0003080!3.19e-13!42;UBERON:0005743!7.23e-13!86;UBERON:0002780!9.99e-13!41;UBERON:0001890!9.99e-13!41;UBERON:0006240!9.99e-13!41;UBERON:0000955!1.28e-12!69;UBERON:0006238!1.28e-12!69;UBERON:0002616!2.38e-12!59;UBERON:0000073!2.60e-11!94;UBERON:0001016!2.60e-11!94;UBERON:0001893!1.39e-09!34;UBERON:0002020!2.35e-09!34;UBERON:0003528!2.35e-09!34;UBERON:0003075!3.24e-09!86;UBERON:0007284!3.24e-09!86;UBERON:0002791!4.51e-09!33;UBERON:0002346!7.29e-09!90;UBERON:0001869!7.94e-09!32;UBERON:0002619!3.04e-08!22;UBERON:0003056!1.06e-07!61;UBERON:0001950!1.93e-07!20;UBERON:0000956!9.67e-07!25;UBERON:0000203!9.67e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.03e-12;53!UBERON:0002616;1.03e-12;53!UBERON:0002780;1.61e-12;41!UBERON:0001890;1.61e-12;41!UBERON:0002619;1.22e-11;22!UBERON:0001893;1.02e-10;34!UBERON:0001950;1.32e-10;20!UBERON:0001869;2.91e-10;32!UBERON:0003528;3.11e-10;34!UBERON:0002020;3.11e-10;34!UBERON:0002791;5.85e-10;32!UBERON:0000956;1.72e-09;25!UBERON:0000203;1.72e-09;25!UBERON:0000955;7.37e-08;68!UBERON:0001017;1.12e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.18e-22,56;UBERON:0005068,1.18e-22,56;UBERON:0006241,1.18e-22,56;UBERON:0007135,1.18e-22,56;UBERON:0000073,1.49e-20,53;UBERON:0002616,1.49e-20,53;UBERON:0001017,1.70e-18,81;UBERON:0002780,1.00e-17,41;UBERON:0001890,1.00e-17,41;UBERON:0003080,1.00e-17,41;UBERON:0006240,1.00e-17,41;UBERON:0007023,2.68e-17,114;UBERON:0000955,8.47e-17,68;UBERON:0006238,8.47e-17,68;UBERON:0001016,3.17e-16,89;UBERON:0003075,3.03e-13,82;UBERON:0007284,3.03e-13,82;UBERON:0001893,4.98e-13,34;UBERON:0003528,1.07e-12,34;UBERON:0002020,1.07e-12,34;UBERON:0002346,1.36e-12,86;UBERON:0002619,4.10e-12,22;UBERON:0001869,6.67e-12,32;UBERON:0002791,1.40e-11,32;UBERON:0001950,6.78e-11,20;UBERON:0003056,2.33e-10,61;UBERON:0000956,6.82e-10,25;UBERON:0000203,6.82e-10,25;UBERON:0010371,1.35e-09,104;UBERON:0011216,1.02e-07,223 | |||
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| ||
|short_description=p3@SLC23A2 | |||
}} | }} |
Latest revision as of 22:53, 16 September 2015
Short description: | p3@SLC23A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC23A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000338244, NM_005116, uc002wlg.1, uc002wlj.1, uc010zqr.1_5end |
EntrezGene: | SLC23A2 |
HGNC: | 10973 |
UniProt: | Q9UGH3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 9.47e-09 | 72 |
granulocyte monocyte progenitor cell | 4.63e-08 | 67 |
monopoietic cell | 7.09e-08 | 59 |
monocyte | 7.09e-08 | 59 |
monoblast | 7.09e-08 | 59 |
promonocyte | 7.09e-08 | 59 |
myeloid lineage restricted progenitor cell | 8.42e-08 | 66 |
macrophage dendritic cell progenitor | 2.64e-07 | 61 |
defensive cell | 9.70e-07 | 48 |
phagocyte | 9.70e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.18e-22 | 56 |
neural rod | 1.18e-22 | 56 |
future spinal cord | 1.18e-22 | 56 |
neural keel | 1.18e-22 | 56 |
regional part of nervous system | 1.49e-20 | 53 |
regional part of brain | 1.49e-20 | 53 |
central nervous system | 1.70e-18 | 81 |
regional part of forebrain | 1.00e-17 | 41 |
forebrain | 1.00e-17 | 41 |
anterior neural tube | 1.00e-17 | 41 |
future forebrain | 1.00e-17 | 41 |
adult organism | 2.68e-17 | 114 |
brain | 8.47e-17 | 68 |
future brain | 8.47e-17 | 68 |
nervous system | 3.17e-16 | 89 |
neural plate | 3.03e-13 | 82 |
presumptive neural plate | 3.03e-13 | 82 |
telencephalon | 4.98e-13 | 34 |
brain grey matter | 1.07e-12 | 34 |
gray matter | 1.07e-12 | 34 |
neurectoderm | 1.36e-12 | 86 |
regional part of cerebral cortex | 4.10e-12 | 22 |
cerebral hemisphere | 6.67e-12 | 32 |
regional part of telencephalon | 1.40e-11 | 32 |
neocortex | 6.78e-11 | 20 |
pre-chordal neural plate | 2.33e-10 | 61 |
cerebral cortex | 6.82e-10 | 25 |
pallium | 6.82e-10 | 25 |
ecto-epithelium | 1.35e-09 | 104 |
organ system subdivision | 1.02e-07 | 223 |