FFCP PHASE1:Hg19::chr15:101142365..101142395,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55180 | |EntrezGene=55180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30922 | |HGNC=30922 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000559149,ENST00000559736,ENST00000560133,ENST00000560272,ENST00000560941,ENST00000561308_5end | |association_with_transcript=0bp_to_ENST00000559149,ENST00000559736,ENST00000560133,ENST00000560272,ENST00000560941,ENST00000561308_5end | ||
|cluster_id=chr15:101142365..101142395,- | |||
|coexpression_cluster_id=C2295 | |||
|description=CAGE_peak_1_at_LINS_5end | |description=CAGE_peak_1_at_LINS_5end | ||
|id=chr15:101142365..101142395,- | |id=chr15:101142365..101142395,- | ||
|ontology_enrichment_celltype=CL:0000037!6.21e-17!172;CL:0000566!6.21e-17!172;CL:0002031!3.21e-16!124;CL:0000542!4.68e-16!53;CL:0000051!4.68e-16!53;CL:0000838!7.06e-16!52;CL:0002032!7.30e-16!165;CL:0000837!7.30e-16!165;CL:0000988!2.41e-15!182;CL:0000738!3.54e-15!140;CL:0002087!4.14e-15!119;CL:0000084!6.45e-12!25;CL:0000827!6.45e-12!25;CL:0000791!7.21e-12!18;CL:0000789!7.21e-12!18;CL:0002420!7.21e-12!18;CL:0002419!7.21e-12!18;CL:0000790!7.21e-12!18;CL:0000625!3.60e-08!11 | |ontology_enrichment_celltype=CL:0000037!6.21e-17!172;CL:0000566!6.21e-17!172;CL:0002031!3.21e-16!124;CL:0000542!4.68e-16!53;CL:0000051!4.68e-16!53;CL:0000838!7.06e-16!52;CL:0002032!7.30e-16!165;CL:0000837!7.30e-16!165;CL:0000988!2.41e-15!182;CL:0000738!3.54e-15!140;CL:0002087!4.14e-15!119;CL:0000084!6.45e-12!25;CL:0000827!6.45e-12!25;CL:0000791!7.21e-12!18;CL:0000789!7.21e-12!18;CL:0002420!7.21e-12!18;CL:0002419!7.21e-12!18;CL:0000790!7.21e-12!18;CL:0000625!3.60e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.06e-12;25!CL:0000791;7.06e-12;18!CL:0000789;7.06e-12;18!CL:0002419;7.06e-12;18!CL:0000542;2.45e-09;53!CL:0000625;3.67e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.30e-17,168;CL:0002031,1.72e-16,120;CL:0000542,4.68e-16,53;CL:0000051,4.68e-16,53;CL:0002032,5.07e-16,161;CL:0000837,5.07e-16,161;CL:0000838,7.06e-16,52;CL:0000988,8.27e-16,177;CL:0000738,2.22e-15,136;CL:0002087,2.26e-15,115;CL:0000084,6.45e-12,25;CL:0000827,6.45e-12,25;CL:0000791,7.21e-12,18;CL:0000789,7.21e-12,18;CL:0002420,7.21e-12,18;CL:0002419,7.21e-12,18;CL:0000790,7.21e-12,18;CL:0000625,3.60e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;7.06e-12;18!CL:0000051;2.45e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.96e-28!115;UBERON:0001049!6.39e-15!57;UBERON:0005068!6.39e-15!57;UBERON:0006241!6.39e-15!57;UBERON:0007135!6.39e-15!57;UBERON:0001017!9.01e-14!82;UBERON:0003080!9.40e-14!42;UBERON:0000073!1.68e-13!94;UBERON:0001016!1.68e-13!94;UBERON:0002780!2.26e-13!41;UBERON:0001890!2.26e-13!41;UBERON:0006240!2.26e-13!41;UBERON:0000955!6.18e-13!69;UBERON:0006238!6.18e-13!69;UBERON:0005743!6.69e-13!86;UBERON:0002616!2.62e-12!59;UBERON:0001893!5.14e-11!34;UBERON:0002020!8.28e-11!34;UBERON:0003528!8.28e-11!34;UBERON:0002791!1.07e-10!33;UBERON:0001869!1.24e-10!32;UBERON:0002619!1.57e-09!22;UBERON:0000178!2.08e-09!15;UBERON:0000179!2.08e-09!15;UBERON:0000463!2.08e-09!15;UBERON:0001950!1.29e-08!20;UBERON:0000956!3.60e-08!25;UBERON:0000203!3.60e-08!25;UBERON:0002390!6.66e-08!102;UBERON:0003061!6.66e-08!102;UBERON:0002346!1.29e-07!90;UBERON:0002193!3.33e-07!112;UBERON:0003075!3.38e-07!86;UBERON:0007284!3.38e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.94e-10;41!UBERON:0001890;3.94e-10;41!UBERON:0001869;7.54e-10;32!UBERON:0001893;1.00e-09;34!UBERON:0002791;1.03e-09;32!UBERON:0003528;1.32e-09;34!UBERON:0002020;1.32e-09;34!UBERON:0002619;1.46e-09;22!UBERON:0000178;2.01e-09;15!UBERON:0000179;2.01e-09;15!UBERON:0000463;2.01e-09;15!UBERON:0001950;1.23e-08;20!UBERON:0000073;2.26e-08;53!UBERON:0002616;2.26e-08;53!UBERON:0000956;2.40e-08;25!UBERON:0000203;2.40e-08;25!UBERON:0007023;2.48e-08;114!UBERON:0001017;5.38e-07;75 | |||
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| ||
|short_description=p1@LINS | |short_description=p1@LINS | ||
}} | }} |
Latest revision as of 22:02, 16 September 2015
Short description: | p1@LINS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINS_5end |
Coexpression cluster: | C2295_CD4_CD8_cerebellum_Small_pituitary_Mast_cord |
Association with transcript: | 0bp_to_ENST00000559149, ENST00000559736, ENST00000560133, ENST00000560272, ENST00000560941, ENST00000561308_5end |
EntrezGene: | LINS |
HGNC: | 30922 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.30e-17 | 168 |
hematopoietic lineage restricted progenitor cell | 1.72e-16 | 120 |
lymphocyte | 4.68e-16 | 53 |
common lymphoid progenitor | 4.68e-16 | 53 |
hematopoietic oligopotent progenitor cell | 5.07e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.07e-16 | 161 |
lymphoid lineage restricted progenitor cell | 7.06e-16 | 52 |
hematopoietic cell | 8.27e-16 | 177 |
leukocyte | 2.22e-15 | 136 |
nongranular leukocyte | 2.26e-15 | 115 |
T cell | 6.45e-12 | 25 |
pro-T cell | 6.45e-12 | 25 |
mature alpha-beta T cell | 7.21e-12 | 18 |
alpha-beta T cell | 7.21e-12 | 18 |
immature T cell | 7.21e-12 | 18 |
mature T cell | 7.21e-12 | 18 |
immature alpha-beta T cell | 7.21e-12 | 18 |
CD8-positive, alpha-beta T cell | 3.60e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.84e-28 | 114 |
neural tube | 1.52e-14 | 56 |
neural rod | 1.52e-14 | 56 |
future spinal cord | 1.52e-14 | 56 |
neural keel | 1.52e-14 | 56 |
nervous system | 5.43e-14 | 89 |
central nervous system | 1.99e-13 | 81 |
regional part of forebrain | 2.26e-13 | 41 |
forebrain | 2.26e-13 | 41 |
anterior neural tube | 2.26e-13 | 41 |
future forebrain | 2.26e-13 | 41 |
regional part of nervous system | 2.92e-13 | 53 |
regional part of brain | 2.92e-13 | 53 |
brain | 1.38e-12 | 68 |
future brain | 1.38e-12 | 68 |
telencephalon | 5.14e-11 | 34 |
brain grey matter | 8.28e-11 | 34 |
gray matter | 8.28e-11 | 34 |
cerebral hemisphere | 1.24e-10 | 32 |
regional part of telencephalon | 1.91e-10 | 32 |
regional part of cerebral cortex | 1.57e-09 | 22 |
blood | 2.08e-09 | 15 |
haemolymphatic fluid | 2.08e-09 | 15 |
organism substance | 2.08e-09 | 15 |
neocortex | 1.29e-08 | 20 |
cerebral cortex | 3.60e-08 | 25 |
pallium | 3.60e-08 | 25 |
hematopoietic system | 4.97e-08 | 98 |
blood island | 4.97e-08 | 98 |
neurectoderm | 9.15e-08 | 86 |
neural plate | 2.41e-07 | 82 |
presumptive neural plate | 2.41e-07 | 82 |
hemolymphoid system | 2.70e-07 | 108 |