FFCP PHASE1:Hg19::chr7:142494920..142494955,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12174 | |HGNC=12174 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390418,uc003wbn.3_5end | |association_with_transcript=0bp_to_ENST00000390418,uc003wbn.3_5end | ||
|cluster_id=chr7:142494920..142494955,+ | |||
|coexpression_cluster_id=C1120 | |coexpression_cluster_id=C1120 | ||
|description=CAGE_peak_1_at_TRBJ2-6_5end | |description=CAGE_peak_1_at_TRBJ2-6_5end | ||
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|ontology_enrichment_celltype=CL:0000542!1.20e-39!53;CL:0000051!1.20e-39!53;CL:0000838!1.53e-38!52;CL:0000084!1.30e-20!25;CL:0000827!1.30e-20!25;CL:0000945!3.16e-16!24;CL:0000826!3.16e-16!24;CL:0000236!6.29e-15!14;CL:0002087!2.01e-14!119;CL:0000738!3.86e-14!140;CL:0000791!8.37e-14!18;CL:0000789!8.37e-14!18;CL:0002420!8.37e-14!18;CL:0002419!8.37e-14!18;CL:0000790!8.37e-14!18;CL:0000988!3.15e-12!182;CL:0000037!6.73e-12!172;CL:0000566!6.73e-12!172;CL:0002031!1.20e-11!124;CL:0002032!8.93e-10!165;CL:0000837!8.93e-10!165;CL:0000625!2.18e-07!11;CL:0000080!2.91e-07!6;CL:0000624!3.84e-07!6 | |ontology_enrichment_celltype=CL:0000542!1.20e-39!53;CL:0000051!1.20e-39!53;CL:0000838!1.53e-38!52;CL:0000084!1.30e-20!25;CL:0000827!1.30e-20!25;CL:0000945!3.16e-16!24;CL:0000826!3.16e-16!24;CL:0000236!6.29e-15!14;CL:0002087!2.01e-14!119;CL:0000738!3.86e-14!140;CL:0000791!8.37e-14!18;CL:0000789!8.37e-14!18;CL:0002420!8.37e-14!18;CL:0002419!8.37e-14!18;CL:0000790!8.37e-14!18;CL:0000988!3.15e-12!182;CL:0000037!6.73e-12!172;CL:0000566!6.73e-12!172;CL:0002031!1.20e-11!124;CL:0002032!8.93e-10!165;CL:0000837!8.93e-10!165;CL:0000625!2.18e-07!11;CL:0000080!2.91e-07!6;CL:0000624!3.84e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000945;4.31e-34;24!CL:0000542;2.09e-32;53!CL:0000236;2.31e-32;13!CL:0000084;1.21e-22;25!CL:0000791;7.14e-14;18!CL:0000789;7.14e-14;18!CL:0002419;7.14e-14;18!CL:0002087;3.30e-09;104!CL:0000624;8.52e-08;6!CL:0000815;8.21e-07;2!CL:0000792;8.21e-07;2!CL:0002677;8.21e-07;2 | |ontology_enrichment_celltype_v019=CL:0000945;4.31e-34;24!CL:0000542;2.09e-32;53!CL:0000236;2.31e-32;13!CL:0000084;1.21e-22;25!CL:0000791;7.14e-14;18!CL:0000789;7.14e-14;18!CL:0002419;7.14e-14;18!CL:0002087;3.30e-09;104!CL:0000624;8.52e-08;6!CL:0000815;8.21e-07;2!CL:0000792;8.21e-07;2!CL:0002677;8.21e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.44e-58,53;CL:0000051,6.44e-58,53;CL:0000838,1.76e-55,52;CL:0000236,1.06e-35,14;CL:0000945,2.20e-34,24;CL:0000826,2.20e-34,24;CL:0002087,1.78e-24,115;CL:0000084,1.07e-22,25;CL:0000827,1.07e-22,25;CL:0002031,1.75e-21,120;CL:0000738,1.04e-20,136;CL:0000988,3.06e-18,177;CL:0000037,5.07e-16,168;CL:0002032,5.16e-16,161;CL:0000837,5.16e-16,161;CL:0000791,6.09e-14,18;CL:0000789,6.09e-14,18;CL:0002420,6.09e-14,18;CL:0002419,6.09e-14,18;CL:0000790,6.09e-14,18;CL:0000624,8.39e-08,6;CL:0000785,2.16e-07,2;CL:0000955,2.16e-07,2;CL:0000818,2.16e-07,2;CL:0000954,2.16e-07,2;CL:0000816,2.16e-07,2;CL:0000815,8.74e-07,2;CL:0000792,8.74e-07,2;CL:0002677,8.74e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;2.09e-32;53!CL:0000790;7.14e-14;18!CL:0000954;1.90e-07;2 | |ontology_enrichment_development_v019=CL:0000051;2.09e-32;53!CL:0000790;7.14e-14;18!CL:0000954;1.90e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.80e-07;10 | |ontology_enrichment_disease_v019=DOID:0060058;1.80e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.68e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.19e-07!15;UBERON:0000179!1.19e-07!15;UBERON:0000463!1.19e-07!15 | |ontology_enrichment_uberon=UBERON:0000178!1.19e-07!15;UBERON:0000179!1.19e-07!15;UBERON:0000463!1.19e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-07;2!UBERON:0005058;1.30e-07;2!UBERON:0009113;1.30e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-07;2!UBERON:0005058;1.30e-07;2!UBERON:0009113;1.30e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.48e-08,4;UBERON:0005058,6.48e-08,4;UBERON:0009113,6.48e-08,4;UBERON:0003295,6.48e-08,4;UBERON:0005562,6.48e-08,4 | |||
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| ||
|short_description=p1@TRBJ2-6 | |short_description=p1@TRBJ2-6 | ||
}} | }} |
Latest revision as of 21:36, 16 September 2015
Short description: | p1@TRBJ2-6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBJ2-6_5end |
Coexpression cluster: | C1120_adult_hairy_mycosis_B_plasma_CD4_cord |
Association with transcript: | 0bp_to_ENST00000390418, uc003wbn.3_5end |
EntrezGene: | NA |
HGNC: | 12174 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.44e-58 | 53 |
common lymphoid progenitor | 6.44e-58 | 53 |
lymphoid lineage restricted progenitor cell | 1.76e-55 | 52 |
B cell | 1.06e-35 | 14 |
lymphocyte of B lineage | 2.20e-34 | 24 |
pro-B cell | 2.20e-34 | 24 |
nongranular leukocyte | 1.78e-24 | 115 |
T cell | 1.07e-22 | 25 |
pro-T cell | 1.07e-22 | 25 |
hematopoietic lineage restricted progenitor cell | 1.75e-21 | 120 |
leukocyte | 1.04e-20 | 136 |
hematopoietic cell | 3.06e-18 | 177 |
hematopoietic stem cell | 5.07e-16 | 168 |
hematopoietic oligopotent progenitor cell | 5.16e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.16e-16 | 161 |
mature alpha-beta T cell | 6.09e-14 | 18 |
alpha-beta T cell | 6.09e-14 | 18 |
immature T cell | 6.09e-14 | 18 |
mature T cell | 6.09e-14 | 18 |
immature alpha-beta T cell | 6.09e-14 | 18 |
CD4-positive, alpha-beta T cell | 8.39e-08 | 6 |
mature B cell | 2.16e-07 | 2 |
pre-B-II cell | 2.16e-07 | 2 |
transitional stage B cell | 2.16e-07 | 2 |
small pre-B-II cell | 2.16e-07 | 2 |
immature B cell | 2.16e-07 | 2 |
regulatory T cell | 8.74e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.74e-07 | 2 |
naive regulatory T cell | 8.74e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.48e-08 | 4 |
hemolymphoid system gland | 6.48e-08 | 4 |
thymic region | 6.48e-08 | 4 |
pharyngeal gland | 6.48e-08 | 4 |
thymus primordium | 6.48e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.68e-07 | 10 |