FFCP PHASE1:Hg19::chr14:99947613..99947617,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84193 | |EntrezGene=84193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20493 | |HGNC=20493 | ||
|TSSclassifier=strong | |||
|UniProt=Q86TU7,A0PJU3 | |UniProt=Q86TU7,A0PJU3 | ||
|association_with_transcript=-387bp_to_NM_032233,NM_199123,uc001ygc.2,uc001ygd.2,uc001ygf.2_5end | |association_with_transcript=-387bp_to_NM_032233,NM_199123,uc001ygc.2,uc001ygd.2,uc001ygf.2_5end | ||
|cluster_id=chr14:99947613..99947617,- | |||
|coexpression_cluster_id=C1356 | |coexpression_cluster_id=C1356 | ||
|description=CAGE_peak_8_at_SETD3_5end | |description=CAGE_peak_8_at_SETD3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000860!4.31e-40!45;CL:0002057!1.47e-38!42;CL:0002009!5.02e-29!65;CL:0002194!2.66e-28!63;CL:0000576!2.66e-28!63;CL:0000040!2.66e-28!63;CL:0000559!2.66e-28!63;CL:0000839!2.31e-27!70;CL:0000557!5.26e-27!71;CL:0002031!2.72e-25!124;CL:0002087!2.37e-24!119;CL:0000766!8.97e-23!76;CL:0000738!1.23e-21!140;CL:0000037!3.15e-17!172;CL:0000566!3.15e-17!172;CL:0002032!7.75e-17!165;CL:0000837!7.75e-17!165;CL:0000988!3.68e-16!182;CL:0000763!1.12e-15!112;CL:0000049!1.12e-15!112 | |ontology_enrichment_celltype=CL:0000860!4.31e-40!45;CL:0002057!1.47e-38!42;CL:0002009!5.02e-29!65;CL:0002194!2.66e-28!63;CL:0000576!2.66e-28!63;CL:0000040!2.66e-28!63;CL:0000559!2.66e-28!63;CL:0000839!2.31e-27!70;CL:0000557!5.26e-27!71;CL:0002031!2.72e-25!124;CL:0002087!2.37e-24!119;CL:0000766!8.97e-23!76;CL:0000738!1.23e-21!140;CL:0000037!3.15e-17!172;CL:0000566!3.15e-17!172;CL:0002032!7.75e-17!165;CL:0000837!7.75e-17!165;CL:0000988!3.68e-16!182;CL:0000763!1.12e-15!112;CL:0000049!1.12e-15!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.26e-65;33!CL:0002057;3.26e-65;33!CL:0000473;2.73e-43;39!CL:0000234;2.73e-43;39!CL:0000576;1.30e-25;48!CL:0000766;5.00e-24;69!CL:0002087;7.29e-10;104!CL:0000763;5.42e-09;100!CL:0001014;3.92e-07;2!CL:0001016;3.92e-07;2 | |ontology_enrichment_celltype_v019=CL:0000860;3.26e-65;33!CL:0002057;3.26e-65;33!CL:0000473;2.73e-43;39!CL:0000234;2.73e-43;39!CL:0000576;1.30e-25;48!CL:0000766;5.00e-24;69!CL:0002087;7.29e-10;104!CL:0000763;5.42e-09;100!CL:0001014;3.92e-07;2!CL:0001016;3.92e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.23e-53,42;CL:0002057,9.23e-53,42;CL:0000473,5.70e-46,48;CL:0000234,5.70e-46,48;CL:0002009,1.37e-40,61;CL:0000557,7.37e-37,67;CL:0002194,1.87e-36,59;CL:0000576,1.87e-36,59;CL:0000040,1.87e-36,59;CL:0000559,1.87e-36,59;CL:0000839,1.79e-32,66;CL:0000766,1.15e-29,72;CL:0000763,2.50e-22,108;CL:0000049,2.50e-22,108;CL:0002031,6.24e-20,120;CL:0002087,5.06e-18,115;CL:0000738,2.20e-17,136;CL:0002032,2.09e-14,161;CL:0000837,2.09e-14,161;CL:0000037,9.97e-14,168;CL:0000988,6.20e-13,177;CL:0001014,3.70e-07,2;CL:0001016,3.70e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.82e-40;42 | |ontology_enrichment_development_v019=CL:0002057;1.82e-40;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.30e-22!80;UBERON:0001474!3.31e-20!86;UBERON:0002390!1.72e-19!102;UBERON:0003061!1.72e-19!102;UBERON:0002193!1.54e-17!112;UBERON:0004765!1.84e-16!101;UBERON:0001434!1.84e-16!101;UBERON:0002405!6.18e-15!115;UBERON:0003081!6.16e-07!216;UBERON:0002204!7.60e-07!167 | |ontology_enrichment_uberon=UBERON:0002371!1.30e-22!80;UBERON:0001474!3.31e-20!86;UBERON:0002390!1.72e-19!102;UBERON:0003061!1.72e-19!102;UBERON:0002193!1.54e-17!112;UBERON:0004765!1.84e-16!101;UBERON:0001434!1.84e-16!101;UBERON:0002405!6.18e-15!115;UBERON:0003081!6.16e-07!216;UBERON:0002204!7.60e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.92e-07;2!UBERON:0005058;3.92e-07;2!UBERON:0009113;3.92e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002370;3.92e-07;2!UBERON:0005058;3.92e-07;2!UBERON:0009113;3.92e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.38e-32,76;UBERON:0002405,5.41e-30,93;UBERON:0001474,6.95e-30,82;UBERON:0002390,2.18e-28,98;UBERON:0003061,2.18e-28,98;UBERON:0004765,4.21e-27,90;UBERON:0002193,1.29e-25,108;UBERON:0001434,3.06e-24,100;UBERON:0002204,8.04e-14,167;UBERON:0003081,8.84e-13,203;UBERON:0000926,1.70e-07,315;UBERON:0004120,1.70e-07,315;UBERON:0006603,1.70e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0.581592955118259,1.13362783106643,0.485168122375632,0.464858073811369,2.46700732813095,1.54853185447552,0.28769239232215,1.7931249457037,0.47296445977717,1.72372840368309,0.645484683583826,2.70852973188684,0.941211697713023,0.272906150057846,0.674170453335254,0.918251677112708,1.28371610830437,1.27867425159808,0.659702600373432,0.598390972864896,0.852449501065388,0.290209238628584,1.13477044938228,1.86846674698672,0.502497330513487,0.521482918420201,1.08594422352558,1.21079900526674,2.57794345191295,2.21523671208619,0,0,0,0,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0.853460445133014,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.909382714338778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.356128142586949,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0.222886768554957,0,0.47748896947538,0.296964680832639,0,0,0,0,0.16480387422676,0.422250816255987,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.23056390438806,0,0.217294743844016,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0.450970258243478,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0.290268993867255,0.219267951258557,0,0,0,0.225980740780532,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0.160753148465019,0.137539436597234,0,0,1.5476039091159,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0.2506898940227,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.124192805882767,0.830091809617385,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.266107110487916,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,1.61394257169231,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0.581592955118259,1.13362783106643,0.485168122375632,0.464858073811369,2.46700732813095,1.54853185447552,0.28769239232215,1.7931249457037,0.47296445977717,1.72372840368309,0.645484683583826,2.70852973188684,0.941211697713023,0.272906150057846,0.674170453335254,0.918251677112708,1.28371610830437,1.27867425159808,0.659702600373432,0.598390972864896,0.852449501065388,0.290209238628584,1.13477044938228,1.86846674698672,0.502497330513487,0.521482918420201,1.08594422352558,1.21079900526674,2.57794345191295,2.21523671208619,0,0,0,0,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0.853460445133014,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.909382714338778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.356128142586949,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0.222886768554957,0,0.47748896947538,0.296964680832639,0,0,0,0,0.16480387422676,0.422250816255987,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.23056390438806,0,0.217294743844016,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0.450970258243478,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0.290268993867255,0.219267951258557,0,0,0,0.225980740780532,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0.160753148465019,0.137539436597234,0,0,1.5476039091159,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0.2506898940227,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.124192805882767,0.830091809617385,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.266107110487916,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,1.61394257169231,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p8@SETD3 | |short_description=p8@SETD3 | ||
}} | }} |
Latest revision as of 21:28, 16 September 2015
Short description: | p8@SETD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SETD3_5end |
Coexpression cluster: | C1356_CD14_thymus_Hodgkin_NK_anaplastic_hepatoblastoma_lymphangiectasia |
Association with transcript: | -387bp_to_NM_032233, NM_199123, uc001ygc.2, uc001ygd.2, uc001ygf.2_5end |
EntrezGene: | SETD3 |
HGNC: | 20493 |
UniProt: | Q86TU7A0PJU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.23e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.23e-53 | 42 |
defensive cell | 5.70e-46 | 48 |
phagocyte | 5.70e-46 | 48 |
macrophage dendritic cell progenitor | 1.37e-40 | 61 |
granulocyte monocyte progenitor cell | 7.37e-37 | 67 |
monopoietic cell | 1.87e-36 | 59 |
monocyte | 1.87e-36 | 59 |
monoblast | 1.87e-36 | 59 |
promonocyte | 1.87e-36 | 59 |
myeloid lineage restricted progenitor cell | 1.79e-32 | 66 |
myeloid leukocyte | 1.15e-29 | 72 |
myeloid cell | 2.50e-22 | 108 |
common myeloid progenitor | 2.50e-22 | 108 |
hematopoietic lineage restricted progenitor cell | 6.24e-20 | 120 |
nongranular leukocyte | 5.06e-18 | 115 |
leukocyte | 2.20e-17 | 136 |
hematopoietic oligopotent progenitor cell | 2.09e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.09e-14 | 161 |
hematopoietic stem cell | 9.97e-14 | 168 |
hematopoietic cell | 6.20e-13 | 177 |
CD1a-positive Langerhans cell | 3.70e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.70e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.38e-32 | 76 |
immune system | 5.41e-30 | 93 |
bone element | 6.95e-30 | 82 |
hematopoietic system | 2.18e-28 | 98 |
blood island | 2.18e-28 | 98 |
skeletal element | 4.21e-27 | 90 |
hemolymphoid system | 1.29e-25 | 108 |
skeletal system | 3.06e-24 | 100 |
musculoskeletal system | 8.04e-14 | 167 |
lateral plate mesoderm | 8.84e-13 | 203 |
mesoderm | 1.70e-07 | 315 |
mesoderm-derived structure | 1.70e-07 | 315 |
presumptive mesoderm | 1.70e-07 | 315 |