FFCP PHASE1:Hg19::chr4:17579073..17579106,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51056 | |EntrezGene=51056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18449 | |HGNC=18449 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000512397_5end | |association_with_transcript=0bp_to_ENST00000512397_5end | ||
|cluster_id=chr4:17579073..17579106,+ | |||
|description=CAGE_peak_2_at_LAP3_5end | |description=CAGE_peak_2_at_LAP3_5end | ||
|id=chr4:17579073..17579106,+ | |id=chr4:17579073..17579106,+ | ||
|ontology_enrichment_celltype=CL:0000048!1.84e-21!430;CL:0000723!7.96e-21!436;CL:0000034!8.76e-21!444;CL:0002057!2.99e-17!42;CL:0002194!8.51e-16!63;CL:0000576!8.51e-16!63;CL:0000040!8.51e-16!63;CL:0000559!8.51e-16!63;CL:0002009!2.25e-15!65;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000766!2.16e-14!76;CL:0000860!3.79e-14!45;CL:0002320!7.69e-14!365;CL:0000134!3.54e-13!358;CL:0000839!3.92e-13!70;CL:0002371!6.13e-13!591;CL:0000144!7.71e-13!625;CL:0000557!3.63e-12!71;CL:0000219!7.50e-11!390;CL:0000012!3.03e-09!682;CL:0000548!4.14e-09!679;CL:0000004!4.14e-09!679;CL:0000255!4.14e-09!679;CL:0000037!8.03e-07!172;CL:0000566!8.03e-07!172 | |ontology_enrichment_celltype=CL:0000048!1.84e-21!430;CL:0000723!7.96e-21!436;CL:0000034!8.76e-21!444;CL:0002057!2.99e-17!42;CL:0002194!8.51e-16!63;CL:0000576!8.51e-16!63;CL:0000040!8.51e-16!63;CL:0000559!8.51e-16!63;CL:0002009!2.25e-15!65;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000766!2.16e-14!76;CL:0000860!3.79e-14!45;CL:0002320!7.69e-14!365;CL:0000134!3.54e-13!358;CL:0000839!3.92e-13!70;CL:0002371!6.13e-13!591;CL:0000144!7.71e-13!625;CL:0000557!3.63e-12!71;CL:0000219!7.50e-11!390;CL:0000012!3.03e-09!682;CL:0000548!4.14e-09!679;CL:0000004!4.14e-09!679;CL:0000255!4.14e-09!679;CL:0000037!8.03e-07!172;CL:0000566!8.03e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.98e-14;33!CL:0002057;4.98e-14;33!CL:0000473;6.84e-14;39!CL:0000234;6.84e-14;39!CL:0000576;4.32e-11;48!CL:0000766;1.73e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.72e-23,427;CL:0000723,1.72e-22,433;CL:0000034,1.93e-22,441;CL:0000473,9.80e-20,48;CL:0000234,9.80e-20,48;CL:0002194,2.87e-19,59;CL:0000576,2.87e-19,59;CL:0000040,2.87e-19,59;CL:0000559,2.87e-19,59;CL:0002009,1.03e-18,61;CL:0000763,1.05e-17,108;CL:0000049,1.05e-17,108;CL:0000766,2.86e-17,72;CL:0000860,2.99e-17,42;CL:0002057,2.99e-17,42;CL:0000839,5.42e-16,66;CL:0002320,3.89e-15,361;CL:0000557,7.40e-15,67;CL:0000134,1.91e-14,354;CL:0000219,5.87e-12,386;CL:0000037,6.30e-08,168;CL:0002032,1.03e-07,161;CL:0000837,1.03e-07,161;CL:0000988,2.81e-07,177;CL:0000738,8.87e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.32e-12;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.64e-18!167;UBERON:0002384!8.76e-13!375;UBERON:0004765!1.62e-12!101;UBERON:0001434!1.62e-12!101;UBERON:0002371!3.32e-11!80;UBERON:0001474!1.23e-10!86;UBERON:0000914!4.22e-10!83;UBERON:0002329!4.22e-10!83;UBERON:0003077!4.22e-10!83;UBERON:0003059!4.22e-10!83;UBERON:0007282!4.22e-10!83;UBERON:0009618!4.22e-10!83;UBERON:0007285!4.22e-10!83;UBERON:0002405!1.75e-09!115;UBERON:0004290!1.03e-08!70;UBERON:0000926!2.80e-08!448;UBERON:0004120!2.80e-08!448;UBERON:0006603!2.80e-08!448;UBERON:0002193!7.27e-08!112;UBERON:0002390!5.84e-07!102;UBERON:0003061!5.84e-07!102 | |ontology_enrichment_uberon=UBERON:0002204!2.64e-18!167;UBERON:0002384!8.76e-13!375;UBERON:0004765!1.62e-12!101;UBERON:0001434!1.62e-12!101;UBERON:0002371!3.32e-11!80;UBERON:0001474!1.23e-10!86;UBERON:0000914!4.22e-10!83;UBERON:0002329!4.22e-10!83;UBERON:0003077!4.22e-10!83;UBERON:0003059!4.22e-10!83;UBERON:0007282!4.22e-10!83;UBERON:0009618!4.22e-10!83;UBERON:0007285!4.22e-10!83;UBERON:0002405!1.75e-09!115;UBERON:0004290!1.03e-08!70;UBERON:0000926!2.80e-08!448;UBERON:0004120!2.80e-08!448;UBERON:0006603!2.80e-08!448;UBERON:0002193!7.27e-08!112;UBERON:0002390!5.84e-07!102;UBERON:0003061!5.84e-07!102 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.14e-21,167;UBERON:0001434,1.29e-15,100;UBERON:0004765,9.03e-15,90;UBERON:0002384,5.17e-14,371;UBERON:0002405,1.19e-13,93;UBERON:0002371,1.45e-13,76;UBERON:0000926,5.70e-13,315;UBERON:0004120,5.70e-13,315;UBERON:0006603,5.70e-13,315;UBERON:0001474,8.12e-13,82;UBERON:0002193,2.16e-09,108;UBERON:0002329,9.19e-09,71;UBERON:0003059,9.19e-09,71;UBERON:0007282,9.19e-09,71;UBERON:0004290,9.19e-09,71;UBERON:0009618,9.19e-09,71;UBERON:0002390,1.90e-08,98;UBERON:0003061,1.90e-08,98;UBERON:0003077,2.99e-08,72;UBERON:0007285,2.99e-08,72;UBERON:0003081,3.65e-08,203;UBERON:0007524,5.38e-08,73 | |||
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| ||
|short_description=p2@LAP3 | |short_description=p2@LAP3 | ||
}} | }} |
Latest revision as of 21:08, 16 September 2015
Short description: | p2@LAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000512397_5end |
EntrezGene: | LAP3 |
HGNC: | 18449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.72e-23 | 427 |
somatic stem cell | 1.72e-22 | 433 |
stem cell | 1.93e-22 | 441 |
defensive cell | 9.80e-20 | 48 |
phagocyte | 9.80e-20 | 48 |
monopoietic cell | 2.87e-19 | 59 |
monocyte | 2.87e-19 | 59 |
monoblast | 2.87e-19 | 59 |
promonocyte | 2.87e-19 | 59 |
macrophage dendritic cell progenitor | 1.03e-18 | 61 |
myeloid cell | 1.05e-17 | 108 |
common myeloid progenitor | 1.05e-17 | 108 |
myeloid leukocyte | 2.86e-17 | 72 |
classical monocyte | 2.99e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.99e-17 | 42 |
myeloid lineage restricted progenitor cell | 5.42e-16 | 66 |
connective tissue cell | 3.89e-15 | 361 |
granulocyte monocyte progenitor cell | 7.40e-15 | 67 |
mesenchymal cell | 1.91e-14 | 354 |
motile cell | 5.87e-12 | 386 |
hematopoietic stem cell | 6.30e-08 | 168 |
hematopoietic oligopotent progenitor cell | 1.03e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.03e-07 | 161 |
hematopoietic cell | 2.81e-07 | 177 |
leukocyte | 8.87e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.14e-21 | 167 |
skeletal system | 1.29e-15 | 100 |
skeletal element | 9.03e-15 | 90 |
connective tissue | 5.17e-14 | 371 |
immune system | 1.19e-13 | 93 |
bone marrow | 1.45e-13 | 76 |
mesoderm | 5.70e-13 | 315 |
mesoderm-derived structure | 5.70e-13 | 315 |
presumptive mesoderm | 5.70e-13 | 315 |
bone element | 8.12e-13 | 82 |
hemolymphoid system | 2.16e-09 | 108 |
somite | 9.19e-09 | 71 |
presomitic mesoderm | 9.19e-09 | 71 |
presumptive segmental plate | 9.19e-09 | 71 |
dermomyotome | 9.19e-09 | 71 |
trunk paraxial mesoderm | 9.19e-09 | 71 |
hematopoietic system | 1.90e-08 | 98 |
blood island | 1.90e-08 | 98 |
paraxial mesoderm | 2.99e-08 | 72 |
presumptive paraxial mesoderm | 2.99e-08 | 72 |
lateral plate mesoderm | 3.65e-08 | 203 |
dense mesenchyme tissue | 5.38e-08 | 73 |