FFCP PHASE1:Hg19::chr2:29336986..29336998,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79745 | |EntrezGene=79745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |HGNC=26108 | ||
|TSSclassifier=strong | |||
|UniProt=A8K6D0,Q8N3C7 | |UniProt=A8K6D0,Q8N3C7 | ||
|association_with_transcript=124bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |association_with_transcript=124bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | ||
|cluster_id=chr2:29336986..29336998,+ | |||
|description=CAGE_peak_9_at_CLIP4_5end | |description=CAGE_peak_9_at_CLIP4_5end | ||
|id=chr2:29336986..29336998,+ | |id=chr2:29336986..29336998,+ | ||
|ontology_enrichment_celltype=CL:0002009!3.12e-22!65;CL:0002194!4.21e-22!63;CL:0000576!4.21e-22!63;CL:0000040!4.21e-22!63;CL:0000559!4.21e-22!63;CL:0000557!4.44e-20!71;CL:0000839!2.19e-19!70;CL:0002057!6.70e-18!42;CL:0000860!8.37e-18!45;CL:0000766!1.39e-16!76;CL:0002087!1.13e-08!119;CL:0002031!1.82e-08!124;CL:0000763!9.18e-08!112;CL:0000049!9.18e-08!112;CL:0000063!3.63e-07!578 | |ontology_enrichment_celltype=CL:0002009!3.12e-22!65;CL:0002194!4.21e-22!63;CL:0000576!4.21e-22!63;CL:0000040!4.21e-22!63;CL:0000559!4.21e-22!63;CL:0000557!4.44e-20!71;CL:0000839!2.19e-19!70;CL:0002057!6.70e-18!42;CL:0000860!8.37e-18!45;CL:0000766!1.39e-16!76;CL:0002087!1.13e-08!119;CL:0002031!1.82e-08!124;CL:0000763!9.18e-08!112;CL:0000049!9.18e-08!112;CL:0000063!3.63e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000235;1.80e-24;6!CL:0000473;9.00e-17;39!CL:0000234;9.00e-17;39!CL:0002619;6.19e-13;3!CL:0000576;3.08e-11;48!CL:0000766;2.63e-09;69!CL:0000860;4.29e-09;33!CL:0002057;4.29e-09;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.55e-26,59;CL:0000576,1.55e-26,59;CL:0000040,1.55e-26,59;CL:0000559,1.55e-26,59;CL:0002009,1.68e-25,61;CL:0000473,6.44e-25,48;CL:0000234,6.44e-25,48;CL:0000235,2.93e-24,6;CL:0000839,3.47e-23,66;CL:0000557,9.17e-23,67;CL:0000766,7.90e-21,72;CL:0002619,2.63e-13,3;CL:0000860,1.16e-12,42;CL:0002057,1.16e-12,42;CL:0002087,1.85e-12,115;CL:0000763,3.50e-12,108;CL:0000049,3.50e-12,108;CL:0002031,1.02e-11,120;CL:0000738,1.01e-09,136;CL:0002032,2.01e-07,161;CL:0000837,2.01e-07,161;CL:0000037,6.60e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;1.98e-09;42 | |||
|ontology_enrichment_disease=DOID:1749!1.92e-09!14;DOID:305!1.01e-07!106 | |ontology_enrichment_disease=DOID:1749!1.92e-09!14;DOID:305!1.01e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.85e-13;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.99e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.93e-18!80;UBERON:0001474!1.32e-15!86;UBERON:0002390!2.95e-13!102;UBERON:0003061!2.95e-13!102;UBERON:0002405!7.77e-13!115;UBERON:0004765!2.73e-12!101;UBERON:0001434!2.73e-12!101;UBERON:0002193!3.73e-11!112;UBERON:0000062!2.46e-10!511 | |ontology_enrichment_uberon=UBERON:0002371!4.93e-18!80;UBERON:0001474!1.32e-15!86;UBERON:0002390!2.95e-13!102;UBERON:0003061!2.95e-13!102;UBERON:0002405!7.77e-13!115;UBERON:0004765!2.73e-12!101;UBERON:0001434!2.73e-12!101;UBERON:0002193!3.73e-11!112;UBERON:0000062!2.46e-10!511 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.29e-21,76;UBERON:0001474,1.22e-19,82;UBERON:0004765,2.06e-17,90;UBERON:0002405,1.12e-16,93;UBERON:0002390,1.50e-15,98;UBERON:0003061,1.50e-15,98;UBERON:0001434,3.93e-15,100;UBERON:0002193,1.30e-13,108;UBERON:0002204,5.61e-07,167 | |||
|phase1_expression=0,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,1.10926203050036,0,0.284338464974843,0,0,0,0,1.79132379391939,2.91504299417082,2.83333124397605,1.74477886535478,1.13362783106643,0.242584061187816,1.85943229524548,0.822335776043652,0.619412741790207,0.863077176966451,0.512321413058201,0.236482229888585,1.03423704220986,0,0,0.941211697713023,2.18324920046277,1.34834090667051,1.53041946185451,0,1.27867425159808,0.989553900560148,0.398927315243264,0,0,0,0,1.25624332628372,0.521482918420201,0.217188844705117,1.21079900526674,0.368277635987565,0.316462387440884,0.422510572623884,0.850417199860174,1.46761051855863,0.44931452458598,0.450530678524519,0.48217676009124,1.71007646244749,0.79566670879636,1.0959849225878,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0.348259474598534,0.797747763113191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0.37223371266318,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0.773043412653187,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0,0,3.44703808522356,1.17002132569619,1.18904929830983,0,0,0.567100388969546,0.626909658919938,0.290633938513962,0.766765358330422,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,0,0,0.199945982364114,2.43247561282381,4.01805673145701,4.21667878966063,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.473107245101804,0.585707074963566,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0.280660094433074,0.512556597022804,1.02341449813341,0,0,0,0,0,0,0,0,0,1.93370076765382,0.114814448164607,0.182091168006717,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.512900250232778,0,0.325378394664303,0.721287081534056,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.330569830721956,0,0.382838137483752,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0,0,0.470719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0.890469640183247,0,0,0,0.276283915531148,0,1.22722419002586,0,0.311039587661807,1.61763032065188,1.07412704805365,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.230850775511391,0.227884111694002,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,1.05499032264014,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0.992975867626496,0.313932918407225,0,1.13843818411917,0.277349346026277,0,0.685946781900644,0.69647365264322,0.17472666824203,0.343972064943233,0.0967563312890851,0,0.0821154570532092,0.290967049465258,0,0,0,0,0,0.391102765469606,2.32460578729448,0,0,0,0,0,0.576219191952599,1.86378803348149,0.471388069233591,0,0,0.509991088181609,0.288950589901519,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,1.47641222272123,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0.0607495566580247,0.335434687599266,0.157611414598396,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36869470307464,0,0.640724475406168,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0.332787154610557,0.0620964029413835,0.553394539744923,0,0.151649117541648,0,0,0,0,0,0,0.554805861502613,0,0.251567901752575,0,1.14420034198462,0.302461847526478,0.15543720058278,0,0,1.34940933649081,0.155262956876259,0,0.265841714557995,0,0,0,0.813741466409323,0.181848659202559,0.322231671127465,0,0,0,0.343395705182793,0,0,0.963099152036517,0,0.521988583930423,0,0,0.489473409012935,0.179088841081487,0,0,0.176689145945881,0.771656153083659,0.844712203265363,0,0.345430341731199,0.607719912354764,0,0,0,0.163565394255844,0,0,0.845248493434508,0,0,2.92765465423387,0,0.368211900503681,2.37795163123056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,4.90738592505128,1.29766695682514,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0.887136517302272,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0.511049710558381,0,0,0,0,0.709618961301111,0.115233987555779,0.857440047187092,0,0,0.354581522651905,0.111231401892069,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,1.41998400876678,1.70426809518315,0,0.22910686854405,0,0,0.335566295393377,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.281951753939561,0,0,2.32120120187355,1.41157948686277,2.16651690060754,0,0,0.430018749454354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0.134704106029175,0.0717222053926763,0,0.488419611665847,2.13454691755431,0,0,0,0,0,1.33151354837103,0,0 | |phase1_expression=0,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,1.10926203050036,0,0.284338464974843,0,0,0,0,1.79132379391939,2.91504299417082,2.83333124397605,1.74477886535478,1.13362783106643,0.242584061187816,1.85943229524548,0.822335776043652,0.619412741790207,0.863077176966451,0.512321413058201,0.236482229888585,1.03423704220986,0,0,0.941211697713023,2.18324920046277,1.34834090667051,1.53041946185451,0,1.27867425159808,0.989553900560148,0.398927315243264,0,0,0,0,1.25624332628372,0.521482918420201,0.217188844705117,1.21079900526674,0.368277635987565,0.316462387440884,0.422510572623884,0.850417199860174,1.46761051855863,0.44931452458598,0.450530678524519,0.48217676009124,1.71007646244749,0.79566670879636,1.0959849225878,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0.348259474598534,0.797747763113191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0.37223371266318,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0.773043412653187,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0,0,3.44703808522356,1.17002132569619,1.18904929830983,0,0,0.567100388969546,0.626909658919938,0.290633938513962,0.766765358330422,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,0,0,0.199945982364114,2.43247561282381,4.01805673145701,4.21667878966063,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.473107245101804,0.585707074963566,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0.280660094433074,0.512556597022804,1.02341449813341,0,0,0,0,0,0,0,0,0,1.93370076765382,0.114814448164607,0.182091168006717,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.512900250232778,0,0.325378394664303,0.721287081534056,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.330569830721956,0,0.382838137483752,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0,0,0.470719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0.890469640183247,0,0,0,0.276283915531148,0,1.22722419002586,0,0.311039587661807,1.61763032065188,1.07412704805365,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.230850775511391,0.227884111694002,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,1.05499032264014,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0.992975867626496,0.313932918407225,0,1.13843818411917,0.277349346026277,0,0.685946781900644,0.69647365264322,0.17472666824203,0.343972064943233,0.0967563312890851,0,0.0821154570532092,0.290967049465258,0,0,0,0,0,0.391102765469606,2.32460578729448,0,0,0,0,0,0.576219191952599,1.86378803348149,0.471388069233591,0,0,0.509991088181609,0.288950589901519,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,1.47641222272123,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0.0607495566580247,0.335434687599266,0.157611414598396,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36869470307464,0,0.640724475406168,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0.332787154610557,0.0620964029413835,0.553394539744923,0,0.151649117541648,0,0,0,0,0,0,0.554805861502613,0,0.251567901752575,0,1.14420034198462,0.302461847526478,0.15543720058278,0,0,1.34940933649081,0.155262956876259,0,0.265841714557995,0,0,0,0.813741466409323,0.181848659202559,0.322231671127465,0,0,0,0.343395705182793,0,0,0.963099152036517,0,0.521988583930423,0,0,0.489473409012935,0.179088841081487,0,0,0.176689145945881,0.771656153083659,0.844712203265363,0,0.345430341731199,0.607719912354764,0,0,0,0.163565394255844,0,0,0.845248493434508,0,0,2.92765465423387,0,0.368211900503681,2.37795163123056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,4.90738592505128,1.29766695682514,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0.887136517302272,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0.511049710558381,0,0,0,0,0.709618961301111,0.115233987555779,0.857440047187092,0,0,0.354581522651905,0.111231401892069,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,1.41998400876678,1.70426809518315,0,0.22910686854405,0,0,0.335566295393377,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.281951753939561,0,0,2.32120120187355,1.41157948686277,2.16651690060754,0,0,0.430018749454354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0.134704106029175,0.0717222053926763,0,0.488419611665847,2.13454691755431,0,0,0,0,0,1.33151354837103,0,0 | ||
|short_description=p9@CLIP4 | |short_description=p9@CLIP4 | ||
}} | }} |
Latest revision as of 20:30, 16 September 2015
Short description: | p9@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CLIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 124bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.55e-26 | 59 |
monocyte | 1.55e-26 | 59 |
monoblast | 1.55e-26 | 59 |
promonocyte | 1.55e-26 | 59 |
macrophage dendritic cell progenitor | 1.68e-25 | 61 |
defensive cell | 6.44e-25 | 48 |
phagocyte | 6.44e-25 | 48 |
macrophage | 2.93e-24 | 6 |
myeloid lineage restricted progenitor cell | 3.47e-23 | 66 |
granulocyte monocyte progenitor cell | 9.17e-23 | 67 |
myeloid leukocyte | 7.90e-21 | 72 |
adult endothelial progenitor cell | 2.63e-13 | 3 |
classical monocyte | 1.16e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-12 | 42 |
nongranular leukocyte | 1.85e-12 | 115 |
myeloid cell | 3.50e-12 | 108 |
common myeloid progenitor | 3.50e-12 | 108 |
hematopoietic lineage restricted progenitor cell | 1.02e-11 | 120 |
leukocyte | 1.01e-09 | 136 |
hematopoietic oligopotent progenitor cell | 2.01e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.01e-07 | 161 |
hematopoietic stem cell | 6.60e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.29e-21 | 76 |
bone element | 1.22e-19 | 82 |
skeletal element | 2.06e-17 | 90 |
immune system | 1.12e-16 | 93 |
hematopoietic system | 1.50e-15 | 98 |
blood island | 1.50e-15 | 98 |
skeletal system | 3.93e-15 | 100 |
hemolymphoid system | 1.30e-13 | 108 |
musculoskeletal system | 5.61e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.99e-13 | 14 |