FFCP PHASE1:Hg19::chr13:23270919..23270923,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=3994 | |HGNC=3994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-206bp_to_ENST00000450676_5end | |association_with_transcript=-206bp_to_ENST00000450676_5end | ||
|cluster_id=chr13:23270919..23270923,- | |||
|coexpression_cluster_id=C804 | |||
|description=CAGE_peak_1_at_FTH1P7_5end | |description=CAGE_peak_1_at_FTH1P7_5end | ||
|id=chr13:23270919..23270923,- | |id=chr13:23270919..23270923,- | ||
|ontology_enrichment_celltype=CL:0000766!2.90e-21!76;CL:0002057!3.45e-21!42;CL:0002194!7.07e-21!63;CL:0000576!7.07e-21!63;CL:0000040!7.07e-21!63;CL:0000559!7.07e-21!63;CL:0000860!1.11e-19!45;CL:0000839!1.98e-19!70;CL:0002009!4.28e-19!65;CL:0000557!7.74e-17!71;CL:0002371!1.26e-13!591;CL:0000548!8.10e-13!679;CL:0000004!8.10e-13!679;CL:0000255!8.10e-13!679;CL:0000144!2.16e-12!625;CL:0000012!3.76e-12!682;CL:0000003!2.72e-10!722;CL:0000048!3.04e-10!430;CL:0000723!1.02e-09!436;CL:0000034!1.12e-08!444;CL:0000063!2.53e-08!578;CL:0000222!9.07e-08!119;CL:0000763!2.94e-07!112;CL:0000049!2.94e-07!112;CL:0000680!4.34e-07!57;CL:0000056!4.34e-07!57;CL:0000355!4.34e-07!57 | |ontology_enrichment_celltype=CL:0000766!2.90e-21!76;CL:0002057!3.45e-21!42;CL:0002194!7.07e-21!63;CL:0000576!7.07e-21!63;CL:0000040!7.07e-21!63;CL:0000559!7.07e-21!63;CL:0000860!1.11e-19!45;CL:0000839!1.98e-19!70;CL:0002009!4.28e-19!65;CL:0000557!7.74e-17!71;CL:0002371!1.26e-13!591;CL:0000548!8.10e-13!679;CL:0000004!8.10e-13!679;CL:0000255!8.10e-13!679;CL:0000144!2.16e-12!625;CL:0000012!3.76e-12!682;CL:0000003!2.72e-10!722;CL:0000048!3.04e-10!430;CL:0000723!1.02e-09!436;CL:0000034!1.12e-08!444;CL:0000063!2.53e-08!578;CL:0000222!9.07e-08!119;CL:0000763!2.94e-07!112;CL:0000049!2.94e-07!112;CL:0000680!4.34e-07!57;CL:0000056!4.34e-07!57;CL:0000355!4.34e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.15e-18;39!CL:0000234;1.15e-18;39!CL:0000860;1.91e-18;33!CL:0002057;1.91e-18;33!CL:0000576;5.12e-13;48!CL:0000766;2.06e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.93e-25,48;CL:0000234,1.93e-25,48;CL:0000766,9.15e-23,72;CL:0002194,1.37e-22,59;CL:0000576,1.37e-22,59;CL:0000040,1.37e-22,59;CL:0000559,1.37e-22,59;CL:0000860,1.36e-21,42;CL:0002057,1.36e-21,42;CL:0000839,6.91e-21,66;CL:0002009,1.36e-20,61;CL:0000557,3.15e-18,67;CL:0000048,2.55e-12,427;CL:0000723,1.48e-11,433;CL:0000034,2.05e-10,441;CL:0000222,1.78e-08,121;CL:0000763,2.23e-08,108;CL:0000049,2.23e-08,108;CL:0000680,7.88e-08,58;CL:0000056,7.88e-08,58;CL:0000355,7.88e-08,58;CL:0000192,4.58e-07,43;CL:0000514,4.58e-07,43;CL:0000187,4.96e-07,55;CL:0002320,7.52e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.54e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.27e-19!167;UBERON:0000926!3.31e-17!448;UBERON:0004120!3.31e-17!448;UBERON:0006603!3.31e-17!448;UBERON:0002371!4.04e-16!80;UBERON:0003081!5.80e-15!216;UBERON:0001474!1.29e-13!86;UBERON:0002193!1.71e-13!112;UBERON:0004765!1.92e-13!101;UBERON:0001434!1.92e-13!101;UBERON:0002405!9.53e-13!115;UBERON:0000467!1.12e-12!625;UBERON:0002390!1.85e-12!102;UBERON:0003061!1.85e-12!102;UBERON:0000480!2.45e-12!626;UBERON:0000468!2.49e-12!659;UBERON:0000923!1.35e-11!604;UBERON:0005291!1.35e-11!604;UBERON:0006598!1.35e-11!604;UBERON:0002532!1.35e-11!604;UBERON:0002050!2.03e-11!605;UBERON:0005423!2.03e-11!605;UBERON:0000922!1.30e-10!612;UBERON:0004535!7.33e-08!110;UBERON:0001009!1.21e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,7.13e-21,167;UBERON:0000926,1.58e-18,315;UBERON:0004120,1.58e-18,315;UBERON:0006603,1.58e-18,315;UBERON:0002371,1.61e-17,76;UBERON:0003081,1.75e-15,203;UBERON:0004765,2.52e-15,90;UBERON:0001474,6.17e-15,82;UBERON:0002405,1.57e-14,93;UBERON:0001434,2.51e-14,100;UBERON:0002193,2.75e-14,108;UBERON:0002390,2.93e-13,98;UBERON:0003061,2.93e-13,98;UBERON:0002050,7.20e-11,564;UBERON:0000923,7.34e-11,560;UBERON:0010316,7.34e-11,560;UBERON:0005291,7.34e-11,560;UBERON:0006598,7.34e-11,560;UBERON:0010317,7.34e-11,560;UBERON:0002532,7.34e-11,560;UBERON:0005423,3.01e-10,581;UBERON:0000922,1.09e-08,592;UBERON:0004535,5.28e-08,109;UBERON:0001009,8.84e-08,112;UBERON:0000486,6.39e-07,83 | |||
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| ||
|short_description=p1@FTH1P7 | |short_description=p1@FTH1P7 | ||
}} | }} |
Latest revision as of 20:18, 16 September 2015
Short description: | p1@FTH1P7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FTH1P7_5end |
Coexpression cluster: | C804_Smooth_mesenchymal_CD14_Mesenchymal_Cardiac_Adipocyte_Fibroblast |
Association with transcript: | -206bp_to_ENST00000450676_5end |
EntrezGene: | NA |
HGNC: | 3994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.93e-25 | 48 |
phagocyte | 1.93e-25 | 48 |
myeloid leukocyte | 9.15e-23 | 72 |
monopoietic cell | 1.37e-22 | 59 |
monocyte | 1.37e-22 | 59 |
monoblast | 1.37e-22 | 59 |
promonocyte | 1.37e-22 | 59 |
classical monocyte | 1.36e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.36e-21 | 42 |
myeloid lineage restricted progenitor cell | 6.91e-21 | 66 |
macrophage dendritic cell progenitor | 1.36e-20 | 61 |
granulocyte monocyte progenitor cell | 3.15e-18 | 67 |
multi fate stem cell | 2.55e-12 | 427 |
somatic stem cell | 1.48e-11 | 433 |
stem cell | 2.05e-10 | 441 |
mesodermal cell | 1.78e-08 | 121 |
myeloid cell | 2.23e-08 | 108 |
common myeloid progenitor | 2.23e-08 | 108 |
muscle precursor cell | 7.88e-08 | 58 |
myoblast | 7.88e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.88e-08 | 58 |
smooth muscle cell | 4.58e-07 | 43 |
smooth muscle myoblast | 4.58e-07 | 43 |
muscle cell | 4.96e-07 | 55 |
connective tissue cell | 7.52e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 7.13e-21 | 167 |
mesoderm | 1.58e-18 | 315 |
mesoderm-derived structure | 1.58e-18 | 315 |
presumptive mesoderm | 1.58e-18 | 315 |
bone marrow | 1.61e-17 | 76 |
lateral plate mesoderm | 1.75e-15 | 203 |
skeletal element | 2.52e-15 | 90 |
bone element | 6.17e-15 | 82 |
immune system | 1.57e-14 | 93 |
skeletal system | 2.51e-14 | 100 |
hemolymphoid system | 2.75e-14 | 108 |
hematopoietic system | 2.93e-13 | 98 |
blood island | 2.93e-13 | 98 |
embryonic structure | 7.20e-11 | 564 |
germ layer | 7.34e-11 | 560 |
germ layer / neural crest | 7.34e-11 | 560 |
embryonic tissue | 7.34e-11 | 560 |
presumptive structure | 7.34e-11 | 560 |
germ layer / neural crest derived structure | 7.34e-11 | 560 |
epiblast (generic) | 7.34e-11 | 560 |
developing anatomical structure | 3.01e-10 | 581 |
embryo | 1.09e-08 | 592 |
cardiovascular system | 5.28e-08 | 109 |
circulatory system | 8.84e-08 | 112 |
multilaminar epithelium | 6.39e-07 | 83 |