FFCP PHASE1:Hg19::chr2:29149934..29149959,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26796 | |EntrezGene=26796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10203 | |HGNC=10203 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_NR_002741,uc002rmq.1_5end | |association_with_transcript=1bp_to_NR_002741,uc002rmq.1_5end | ||
|cluster_id=chr2:29149934..29149959,+ | |||
|coexpression_cluster_id=C406 | |coexpression_cluster_id=C406 | ||
|description=CAGE_peak_1_at_SNORD53_5end | |description=CAGE_peak_1_at_SNORD53_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002621!1.08e-09!3 | |ontology_enrichment_celltype=CL:0002621!1.08e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0002166;4.27e-34;3!CL:0002521;5.96e-34;3!CL:0000136;5.70e-09;13!CL:0002159;1.86e-08;14 | |ontology_enrichment_celltype_v019=CL:0002166;4.27e-34;3!CL:0002521;5.96e-34;3!CL:0000136;5.70e-09;13!CL:0002159;1.86e-08;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002166,4.27e-34,3;CL:0002521,5.96e-34,3;CL:0002159,1.86e-08,14;CL:0000136,5.93e-08,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!1.08e-09!3 | |ontology_enrichment_uberon=UBERON:0001949!1.08e-09!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002190;5.96e-34;3!UBERON:0001708;5.56e-26;4!UBERON:0008895;5.56e-26;4!UBERON:0011159;4.21e-21;5!UBERON:0002072;5.15e-21;5!UBERON:0011137;2.16e-10;11!UBERON:0010323;2.16e-10;11!UBERON:0001013;2.00e-08;14!UBERON:0000075;1.45e-07;16 | |ontology_enrichment_uberon_v019=UBERON:0002190;5.96e-34;3!UBERON:0001708;5.56e-26;4!UBERON:0008895;5.56e-26;4!UBERON:0011159;4.21e-21;5!UBERON:0002072;5.15e-21;5!UBERON:0011137;2.16e-10;11!UBERON:0010323;2.16e-10;11!UBERON:0001013;2.00e-08;14!UBERON:0000075;1.45e-07;16 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002190,5.96e-34,3;UBERON:0001708,5.56e-26,4;UBERON:0008895,5.56e-26,4;UBERON:0011159,4.21e-21,5;UBERON:0002072,5.15e-21,5;UBERON:0010188,7.67e-18,6;UBERON:0002539,7.67e-18,6;UBERON:0008816,7.67e-18,6;UBERON:0010323,2.16e-10,11;UBERON:0011137,1.86e-08,14;UBERON:0001013,2.00e-08,14;UBERON:0000075,1.45e-07,16;UBERON:0008814,7.18e-07,18 | |||
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| ||
|short_description=p1@SNORD53 | |short_description=p1@SNORD53 | ||
}} | }} |
Latest revision as of 20:06, 16 September 2015
Short description: | p1@SNORD53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNORD53_5end |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | 1bp_to_NR_002741, uc002rmq.1_5end |
EntrezGene: | SNORD53 |
HGNC: | 10203 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 4.27e-34 | 3 |
subcutaneous fat cell | 5.96e-34 | 3 |
general ecto-epithelial cell | 1.86e-08 | 14 |
fat cell | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
subcutaneous adipose tissue | 5.96e-34 | 3 |
jaw skeleton | 5.56e-26 | 4 |
splanchnocranium | 5.56e-26 | 4 |
primary subdivision of cranial skeletal system | 4.21e-21 | 5 |
hypodermis | 5.15e-21 | 5 |
protuberance | 7.67e-18 | 6 |
pharyngeal arch | 7.67e-18 | 6 |
embryonic head | 7.67e-18 | 6 |
cranial skeletal system | 2.16e-10 | 11 |
axial skeletal system | 1.86e-08 | 14 |
adipose tissue | 2.00e-08 | 14 |
subdivision of skeletal system | 1.45e-07 | 16 |
pharyngeal arch system | 7.18e-07 | 18 |