FFCP PHASE1:Hg19::chr19:19496624..19496660,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:19496624..19496660,+
|short_description=p3@GATAD2A
|description=CAGE_peak_3_at_GATAD2A_5end
|association_with_transcript=0bp_to_ENST00000252577,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54815 | |EntrezGene=54815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29989 | |HGNC=29989 | ||
|TSSclassifier=strong | |||
|UniProt=Q86YP4,C9JJK9 | |UniProt=Q86YP4,C9JJK9 | ||
|association_with_transcript=0bp_to_ENST00000252577,ENST00000360315,ENST00000417582,NM_017660,uc010xqt.1,uc010xqu.1_5end | |||
|cluster_id=chr19:19496624..19496660,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_GATAD2A_5end | |||
|id=chr19:19496624..19496660,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.12e-41!172;CL:0000566!1.12e-41!172;CL:0002032!2.45e-40!165;CL:0000837!2.45e-40!165;CL:0000988!3.62e-40!182;CL:0000763!2.61e-39!112;CL:0000049!2.61e-39!112;CL:0000738!4.19e-36!140;CL:0000766!3.24e-34!76;CL:0000557!1.09e-30!71;CL:0002031!3.53e-29!124;CL:0000839!1.03e-28!70;CL:0002009!2.50e-28!65;CL:0002087!3.95e-28!119;CL:0002194!3.37e-27!63;CL:0000576!3.37e-27!63;CL:0000040!3.37e-27!63;CL:0000559!3.37e-27!63;CL:0002057!3.94e-26!42;CL:0000860!4.05e-25!45;CL:0000063!5.07e-13!578;CL:0000003!2.69e-08!722;CL:0000115!8.96e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.92e-20;33!CL:0002057;2.92e-20;33!CL:0000473;5.86e-19;39!CL:0000234;5.86e-19;39!CL:0000576;3.80e-17;48!CL:0000766;5.08e-16;69!CL:0000763;1.01e-12;100!CL:0002087;2.95e-09;104!CL:0000738;1.89e-08;136!CL:0000988;1.11e-07;177!CL:0000094;9.84e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.35e-42,168;CL:0002032,4.97e-41,161;CL:0000837,4.97e-41,161;CL:0000988,1.01e-40,177;CL:0000763,1.59e-40,108;CL:0000049,1.59e-40,108;CL:0000738,8.42e-37,136;CL:0000766,9.12e-36,72;CL:0000557,3.52e-32,67;CL:0000839,4.00e-30,66;CL:0002009,7.68e-30,61;CL:0002031,8.04e-30,120;CL:0002087,8.82e-29,115;CL:0002194,1.07e-28,59;CL:0000576,1.07e-28,59;CL:0000040,1.07e-28,59;CL:0000559,1.07e-28,59;CL:0000473,1.64e-28,48;CL:0000234,1.64e-28,48;CL:0000860,3.72e-26,42;CL:0002057,3.72e-26,42;CL:0000115,8.49e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-19;42!CL:0000049;1.47e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.67e-33!112;UBERON:0002390!7.25e-32!102;UBERON:0003061!7.25e-32!102;UBERON:0002371!4.91e-26!80;UBERON:0001474!9.50e-24!86;UBERON:0002405!2.03e-23!115;UBERON:0003081!1.61e-15!216;UBERON:0004765!1.97e-15!101;UBERON:0001434!1.97e-15!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.36e-34,108;UBERON:0002390,7.04e-33,98;UBERON:0003061,7.04e-33,98;UBERON:0002405,2.60e-29,93;UBERON:0002371,4.06e-27,76;UBERON:0001474,1.08e-24,82;UBERON:0004765,3.31e-19,90;UBERON:0003081,1.17e-14,203;UBERON:0001434,4.49e-14,100 | |||
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| ||
|short_description=p3@GATAD2A | |||
}} | }} |
Latest revision as of 19:50, 16 September 2015
Short description: | p3@GATAD2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GATAD2A_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000252577, ENST00000360315, ENST00000417582, NM_017660, uc010xqt.1, uc010xqu.1_5end |
EntrezGene: | GATAD2A |
HGNC: | 29989 |
UniProt: | Q86YP4C9JJK9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.35e-42 | 168 |
hematopoietic oligopotent progenitor cell | 4.97e-41 | 161 |
hematopoietic multipotent progenitor cell | 4.97e-41 | 161 |
hematopoietic cell | 1.01e-40 | 177 |
myeloid cell | 1.59e-40 | 108 |
common myeloid progenitor | 1.59e-40 | 108 |
leukocyte | 8.42e-37 | 136 |
myeloid leukocyte | 9.12e-36 | 72 |
granulocyte monocyte progenitor cell | 3.52e-32 | 67 |
myeloid lineage restricted progenitor cell | 4.00e-30 | 66 |
macrophage dendritic cell progenitor | 7.68e-30 | 61 |
hematopoietic lineage restricted progenitor cell | 8.04e-30 | 120 |
nongranular leukocyte | 8.82e-29 | 115 |
monopoietic cell | 1.07e-28 | 59 |
monocyte | 1.07e-28 | 59 |
monoblast | 1.07e-28 | 59 |
promonocyte | 1.07e-28 | 59 |
defensive cell | 1.64e-28 | 48 |
phagocyte | 1.64e-28 | 48 |
classical monocyte | 3.72e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.72e-26 | 42 |
endothelial cell | 8.49e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 5.36e-34 | 108 |
hematopoietic system | 7.04e-33 | 98 |
blood island | 7.04e-33 | 98 |
immune system | 2.60e-29 | 93 |
bone marrow | 4.06e-27 | 76 |
bone element | 1.08e-24 | 82 |
skeletal element | 3.31e-19 | 90 |
lateral plate mesoderm | 1.17e-14 | 203 |
skeletal system | 4.49e-14 | 100 |