FFCP PHASE1:Hg19::chr1:24151903..24151939,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3155 | |EntrezGene=3155 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5005 | |HGNC=5005 | ||
|TSSclassifier=strong | |||
|UniProt=B4DUP4,F5GYT9 | |UniProt=B4DUP4,F5GYT9 | ||
|association_with_transcript=0bp_to_ENST00000436439,ENST00000509389,ENST00000513148,ENST00000543166_5end | |association_with_transcript=0bp_to_ENST00000436439,ENST00000509389,ENST00000513148,ENST00000543166_5end | ||
|cluster_id=chr1:24151903..24151939,- | |||
|description=CAGE_peak_1_at_HMGCL_5end | |description=CAGE_peak_1_at_HMGCL_5end | ||
|id=chr1:24151903..24151939,- | |id=chr1:24151903..24151939,- | ||
|ontology_enrichment_celltype=CL:0000183!8.21e-10!59;CL:0000680!4.00e-08!57;CL:0000056!4.00e-08!57;CL:0000355!4.00e-08!57;CL:0000192!7.82e-08!42;CL:0000514!7.82e-08!42;CL:0000187!1.11e-07!54;CL:0000055!6.02e-07!180;CL:0002371!7.89e-07!591 | |ontology_enrichment_celltype=CL:0000183!8.21e-10!59;CL:0000680!4.00e-08!57;CL:0000056!4.00e-08!57;CL:0000355!4.00e-08!57;CL:0000192!7.82e-08!42;CL:0000514!7.82e-08!42;CL:0000187!1.11e-07!54;CL:0000055!6.02e-07!180;CL:0002371!7.89e-07!591 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.57e-08,58;CL:0000056,1.57e-08,58;CL:0000355,1.57e-08,58;CL:0000192,2.84e-08,43;CL:0000514,2.84e-08,43;CL:0000187,4.38e-08,55;CL:0000222,3.19e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.08e-14!143;UBERON:0002100!8.91e-11!216;UBERON:0003914!5.80e-10!118;UBERON:0000914!1.70e-09!83;UBERON:0002329!1.70e-09!83;UBERON:0003077!1.70e-09!83;UBERON:0003059!1.70e-09!83;UBERON:0007282!1.70e-09!83;UBERON:0009618!1.70e-09!83;UBERON:0007285!1.70e-09!83;UBERON:0000475!2.85e-09!365;UBERON:0000481!3.52e-09!347;UBERON:0000486!5.73e-09!82;UBERON:0000490!7.50e-09!138;UBERON:0002385!8.32e-09!63;UBERON:0001015!8.32e-09!63;UBERON:0000383!8.32e-09!63;UBERON:0004290!1.42e-08!70;UBERON:0000468!2.46e-08!659;UBERON:0001134!2.52e-08!61;UBERON:0002036!2.52e-08!61;UBERON:0003082!2.52e-08!61;UBERON:0000119!4.53e-08!312;UBERON:0000483!4.83e-08!309;UBERON:0003104!4.88e-08!238;UBERON:0009142!4.88e-08!238;UBERON:0002417!1.44e-07!61;UBERON:0000916!1.44e-07!61;UBERON:0003103!4.50e-07!69;UBERON:0009569!5.34e-07!113;UBERON:0005172!5.49e-07!55;UBERON:0005173!5.49e-07!55;UBERON:0002049!9.17e-07!79;UBERON:0007798!9.17e-07!79 | |ontology_enrichment_uberon=UBERON:0005256!1.08e-14!143;UBERON:0002100!8.91e-11!216;UBERON:0003914!5.80e-10!118;UBERON:0000914!1.70e-09!83;UBERON:0002329!1.70e-09!83;UBERON:0003077!1.70e-09!83;UBERON:0003059!1.70e-09!83;UBERON:0007282!1.70e-09!83;UBERON:0009618!1.70e-09!83;UBERON:0007285!1.70e-09!83;UBERON:0000475!2.85e-09!365;UBERON:0000481!3.52e-09!347;UBERON:0000486!5.73e-09!82;UBERON:0000490!7.50e-09!138;UBERON:0002385!8.32e-09!63;UBERON:0001015!8.32e-09!63;UBERON:0000383!8.32e-09!63;UBERON:0004290!1.42e-08!70;UBERON:0000468!2.46e-08!659;UBERON:0001134!2.52e-08!61;UBERON:0002036!2.52e-08!61;UBERON:0003082!2.52e-08!61;UBERON:0000119!4.53e-08!312;UBERON:0000483!4.83e-08!309;UBERON:0003104!4.88e-08!238;UBERON:0009142!4.88e-08!238;UBERON:0002417!1.44e-07!61;UBERON:0000916!1.44e-07!61;UBERON:0003103!4.50e-07!69;UBERON:0009569!5.34e-07!113;UBERON:0005172!5.49e-07!55;UBERON:0005173!5.49e-07!55;UBERON:0002049!9.17e-07!79;UBERON:0007798!9.17e-07!79 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.19e-14,160;UBERON:0009142,1.19e-14,160;UBERON:0005256,1.04e-11,122;UBERON:0007503,7.70e-11,78;UBERON:0000490,1.28e-09,148;UBERON:0003914,1.31e-09,117;UBERON:0002100,1.57e-09,199;UBERON:0000486,2.39e-09,83;UBERON:0002385,3.25e-09,64;UBERON:0001015,3.25e-09,64;UBERON:0000383,3.25e-09,64;UBERON:0007524,4.85e-09,73;UBERON:0002329,5.77e-09,71;UBERON:0003059,5.77e-09,71;UBERON:0007282,5.77e-09,71;UBERON:0004290,5.77e-09,71;UBERON:0009618,5.77e-09,71;UBERON:0003077,8.72e-09,72;UBERON:0007285,8.72e-09,72;UBERON:0000119,8.91e-09,309;UBERON:0000483,9.49e-09,306;UBERON:0001134,9.95e-09,62;UBERON:0002036,9.95e-09,62;UBERON:0003082,9.95e-09,62;UBERON:0002417,3.46e-07,60;UBERON:0000916,3.46e-07,60 | |||
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| ||
|short_description=p1@HMGCL | |short_description=p1@HMGCL | ||
}} | }} |
Latest revision as of 17:46, 16 September 2015
Short description: | p1@HMGCL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGCL_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000436439, ENST00000509389, ENST00000513148, ENST00000543166_5end |
EntrezGene: | HMGCL |
HGNC: | 5005 |
UniProt: | B4DUP4F5GYT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.57e-08 | 58 |
myoblast | 1.57e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.57e-08 | 58 |
smooth muscle cell | 2.84e-08 | 43 |
smooth muscle myoblast | 2.84e-08 | 43 |
muscle cell | 4.38e-08 | 55 |
mesodermal cell | 3.19e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.19e-14 | 160 |
entire embryonic mesenchyme | 1.19e-14 | 160 |
trunk mesenchyme | 1.04e-11 | 122 |
epithelial vesicle | 7.70e-11 | 78 |
unilaminar epithelium | 1.28e-09 | 148 |
epithelial tube | 1.31e-09 | 117 |
trunk | 1.57e-09 | 199 |
multilaminar epithelium | 2.39e-09 | 83 |
muscle tissue | 3.25e-09 | 64 |
musculature | 3.25e-09 | 64 |
musculature of body | 3.25e-09 | 64 |
dense mesenchyme tissue | 4.85e-09 | 73 |
somite | 5.77e-09 | 71 |
presomitic mesoderm | 5.77e-09 | 71 |
presumptive segmental plate | 5.77e-09 | 71 |
dermomyotome | 5.77e-09 | 71 |
trunk paraxial mesoderm | 5.77e-09 | 71 |
paraxial mesoderm | 8.72e-09 | 72 |
presumptive paraxial mesoderm | 8.72e-09 | 72 |
cell layer | 8.91e-09 | 309 |
epithelium | 9.49e-09 | 306 |
skeletal muscle tissue | 9.95e-09 | 62 |
striated muscle tissue | 9.95e-09 | 62 |
myotome | 9.95e-09 | 62 |
abdominal segment of trunk | 3.46e-07 | 60 |
abdomen | 3.46e-07 | 60 |