FFCP PHASE1:Hg19::chr3:171528432..171528445,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5337 | |EntrezGene=5337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9067 | |HGNC=9067 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=58bp_to_uc003fhs.2,uc003fht.2_5end | |association_with_transcript=58bp_to_uc003fhs.2,uc003fht.2_5end | ||
|cluster_id=chr3:171528432..171528445,- | |||
|coexpression_cluster_id=C432 | |coexpression_cluster_id=C432 | ||
|description=CAGE_peak_5_at_PLD1_5end | |description=CAGE_peak_5_at_PLD1_5end | ||
|id=chr3:171528432..171528445,- | |id=chr3:171528432..171528445,- | ||
|ontology_enrichment_celltype=CL:0000860!6.84e-17!45;CL:0002057!1.60e-16!42;CL:0002194!4.69e-14!63;CL:0000576!4.69e-14!63;CL:0000040!4.69e-14!63;CL:0000559!4.69e-14!63;CL:0002009!3.71e-13!65;CL:0000557!2.16e-12!71;CL:0000839!9.04e-12!70;CL:0000766!1.61e-10!76;CL:0000048!9.69e-07!430 | |ontology_enrichment_celltype=CL:0000860!6.84e-17!45;CL:0002057!1.60e-16!42;CL:0002194!4.69e-14!63;CL:0000576!4.69e-14!63;CL:0000040!4.69e-14!63;CL:0000559!4.69e-14!63;CL:0002009!3.71e-13!65;CL:0000557!2.16e-12!71;CL:0000839!9.04e-12!70;CL:0000766!1.61e-10!76;CL:0000048!9.69e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.21e-46;33!CL:0002057;6.21e-46;33!CL:0000473;2.81e-31;39!CL:0000234;2.81e-31;39!CL:0000576;4.36e-20;48!CL:0000766;6.36e-15;69!CL:0002087;9.16e-08;104!CL:0000214;5.72e-07;3!CL:0000763;6.40e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.67e-42,42;CL:0002057,9.67e-42,42;CL:0000473,6.34e-36,48;CL:0000234,6.34e-36,48;CL:0002194,8.78e-28,59;CL:0000576,8.78e-28,59;CL:0000040,8.78e-28,59;CL:0000559,8.78e-28,59;CL:0002009,9.85e-27,61;CL:0000557,1.15e-26,67;CL:0000839,2.21e-24,66;CL:0000766,5.47e-22,72;CL:0000763,8.93e-15,108;CL:0000049,8.93e-15,108;CL:0002087,1.63e-13,115;CL:0002031,9.35e-13,120;CL:0000738,1.04e-10,136;CL:0002032,2.21e-09,161;CL:0000837,2.21e-09,161;CL:0000037,8.62e-09,168;CL:0000988,4.21e-08,177;CL:0000134,1.83e-07,354;CL:0002320,3.48e-07,361;CL:0000214,3.83e-07,3;CL:0000219,7.35e-07,386;CL:0000048,8.32e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-30;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.83e-11!80;UBERON:0002204!1.61e-09!167;UBERON:0004765!3.87e-09!101;UBERON:0001434!3.87e-09!101;UBERON:0001474!4.22e-09!86;UBERON:0002405!3.14e-08!115;UBERON:0002390!9.56e-07!102;UBERON:0003061!9.56e-07!102 | |ontology_enrichment_uberon=UBERON:0002371!6.83e-11!80;UBERON:0002204!1.61e-09!167;UBERON:0004765!3.87e-09!101;UBERON:0001434!3.87e-09!101;UBERON:0001474!4.22e-09!86;UBERON:0002405!3.14e-08!115;UBERON:0002390!9.56e-07!102;UBERON:0003061!9.56e-07!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;5.72e-07;3!UBERON:0007616;5.72e-07;3!UBERON:0002217;5.72e-07;3!UBERON:0002018;5.72e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.76e-23,76;UBERON:0001434,4.73e-22,100;UBERON:0001474,6.03e-21,82;UBERON:0004765,1.14e-18,90;UBERON:0002405,6.47e-18,93;UBERON:0002390,9.21e-17,98;UBERON:0003061,9.21e-17,98;UBERON:0002193,8.93e-15,108;UBERON:0002204,1.13e-14,167;UBERON:0003081,4.90e-12,203;UBERON:0000926,1.05e-07,315;UBERON:0004120,1.05e-07,315;UBERON:0006603,1.05e-07,315;UBERON:0006915,3.83e-07,3;UBERON:0007616,3.83e-07,3;UBERON:0002217,3.83e-07,3;UBERON:0002018,3.83e-07,3;UBERON:0002384,8.38e-07,371 | |||
|phase1_expression=0.54503513781167,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.247532705920093,0.662794751455832,0.672325146451775,0,0,0,0,0,0,0,0,0,0.534893840235659,0.328402357799783,0.472264687882075,0,0,0,0,0,0,0,0,0,0,1.00272223735071,0.651032612147555,0.223915474239924,0,0.257575567634187,0.145398238779565,1.88937971844405,0,0.929716147622738,7.81218987241469,2.47765096716083,0.575384784644301,3.84241059793651,0.709446689665756,5.5159308917859,15.4916324060118,5.41705946377367,0.752969358170419,1.63743690034707,0.898893937780338,3.67300670845083,12.5162320559677,5.11469700639233,0,1.19678194572979,0,7.54544020434318,29.5040316839393,6.85104473895132,0.502497330513487,4.69334626578181,0.65156653411535,4.84319602106695,15.4676607114777,6.0127853613768,0,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0.869079113764942,0,0,0.0945348171640679,0,0,0,0.364295288292542,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,0,0.662045904066094,0,0,0,1.06748995729705,0,0.311211035399766,0.134710672069688,0.326923806226917,0.302714855289863,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0.309977343527296,0,0.247266929278557,0,0,0,0,0,0,0,3.15499923703853,0,0,1.06778694409284,0.423863802319124,0,0.412210116953756,0.257640540045629,0.18611685633159,0,0,0,0.552299391853796,0.161646056818812,0,0.10075209822764,0,0,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0.951270761172991,0,0,0.492434012174795,0.234004265139238,0.445893486866185,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0,0,0,0,0.43596006883328,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0.858840442033979,0.500170521059677,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0.30239029332968,0.496215615637554,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0.184161977871793,0.114814448164607,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0.154048617114644,0.614014698904518,0.137836572484531,0.322260734604821,0.725083469571143,0.426133137080504,0,0,0,0,0.10115778085555,0,0,0.6970372701606,0.308033580176089,1.06461206063404,0,0,0,0,0,0.190630193923825,0.255897791311334,0,1.27281299170375,0,0,0.274537029736055,0.353437207037059,0,0,0.421258456238981,0,0.487426979262569,0,0,0.848432591722276,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,1.47775344708365,1.97576935775941,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0.649243880549111,0,0.456469358066384,0.156679895773023,0,0,0.321176150207399,0,0,0.343505344755765,0.307240764308458,0,0.500547425135725,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0,0.307160702099232,0,0,0.779160935160341,1.15362711958732,0,0.19924798825107,0.828851746593443,0,0,0.246169610922139,0.311039587661807,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.230850775511391,0.797594390929008,12.2198869325672,0.897576444097721,0.651884231532048,0.638002319463839,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0.330991955875499,0,0,0.853828638089378,0,0.173559738335131,0.195984794828755,0.435296032902013,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.193978032976839,0,0,0.274083849293502,0,0.0633107959558787,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0,0,1.73370353940911,0,0.273810757783986,5.10986352267889,0,0.262887354279314,0.279282401272254,0.229160424011684,3.58936512288407,0.599037001496973,0,0.446342914883745,0.0671834724867263,0,0,0.551482276150566,0.247247575143499,0.606631894687664,0.196854963029498,0.423366660328922,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0.35857467866569,0.575745591958336,0,0,0,0,0,0,0,0.082092520749339,0,0.226624183040251,0.293104467356165,0,0.129282956361551,0.13223260174269,0.855434189421647,0,0.106787412567695,0,0,0,0,0,1.27668251554036,1.63205341010842,0.7520696820681,0.306345576763462,0.327872630709804,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.249960815924213,0,0.570930667089935,0.470531639396343,0,0,0.447764408660622,0.467426619694449,1.10961172300523,0.568209015825267,0.754703705257725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| ||
|short_description=p5@PLD1 | |short_description=p5@PLD1 | ||
}} | }} |
Latest revision as of 17:38, 16 September 2015
Short description: | p5@PLD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PLD1_5end |
Coexpression cluster: | C432_CD14_choriocarcinoma_Peripheral_CD34_Mast_Fibroblast_granulocyte |
Association with transcript: | 58bp_to_uc003fhs.2, uc003fht.2_5end |
EntrezGene: | PLD1 |
HGNC: | 9067 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.67e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.67e-42 | 42 |
defensive cell | 6.34e-36 | 48 |
phagocyte | 6.34e-36 | 48 |
monopoietic cell | 8.78e-28 | 59 |
monocyte | 8.78e-28 | 59 |
monoblast | 8.78e-28 | 59 |
promonocyte | 8.78e-28 | 59 |
macrophage dendritic cell progenitor | 9.85e-27 | 61 |
granulocyte monocyte progenitor cell | 1.15e-26 | 67 |
myeloid lineage restricted progenitor cell | 2.21e-24 | 66 |
myeloid leukocyte | 5.47e-22 | 72 |
myeloid cell | 8.93e-15 | 108 |
common myeloid progenitor | 8.93e-15 | 108 |
nongranular leukocyte | 1.63e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 9.35e-13 | 120 |
leukocyte | 1.04e-10 | 136 |
hematopoietic oligopotent progenitor cell | 2.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.21e-09 | 161 |
hematopoietic stem cell | 8.62e-09 | 168 |
hematopoietic cell | 4.21e-08 | 177 |
mesenchymal cell | 1.83e-07 | 354 |
connective tissue cell | 3.48e-07 | 361 |
synovial cell | 3.83e-07 | 3 |
motile cell | 7.35e-07 | 386 |
multi fate stem cell | 8.32e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.76e-23 | 76 |
skeletal system | 4.73e-22 | 100 |
bone element | 6.03e-21 | 82 |
skeletal element | 1.14e-18 | 90 |
immune system | 6.47e-18 | 93 |
hematopoietic system | 9.21e-17 | 98 |
blood island | 9.21e-17 | 98 |
hemolymphoid system | 8.93e-15 | 108 |
musculoskeletal system | 1.13e-14 | 167 |
lateral plate mesoderm | 4.90e-12 | 203 |
mesoderm | 1.05e-07 | 315 |
mesoderm-derived structure | 1.05e-07 | 315 |
presumptive mesoderm | 1.05e-07 | 315 |
stratified squamous epithelium | 3.83e-07 | 3 |
layer of synovial tissue | 3.83e-07 | 3 |
synovial joint | 3.83e-07 | 3 |
synovial membrane of synovial joint | 3.83e-07 | 3 |
connective tissue | 8.38e-07 | 371 |