FFCP PHASE1:Hg19::chr5:161274731..161274747,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2554 | |EntrezGene=2554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4075 | |HGNC=4075 | ||
|TSSclassifier=strong | |||
|UniProt=P14867 | |UniProt=P14867 | ||
|association_with_transcript=46bp_to_ENST00000428797,NM_001127643,uc010jix.2_5end | |association_with_transcript=46bp_to_ENST00000428797,NM_001127643,uc010jix.2_5end | ||
|cluster_id=chr5:161274731..161274747,+ | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_11_at_GABRA1_5end | |description=CAGE_peak_11_at_GABRA1_5end | ||
|id=chr5:161274731..161274747,+ | |id=chr5:161274731..161274747,+ | ||
|ontology_enrichment_celltype=CL:0002242!1.75e-07!1;CL:0000228!1.75e-07!1;CL:0002372!1.75e-07!1 | |ontology_enrichment_celltype=CL:0002242!1.75e-07!1;CL:0000228!1.75e-07!1;CL:0002372!1.75e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000228;1.78e-29;1!CL:0002372;1.78e-29;1!CL:0000056;2.11e-08;4!CL:0000737;2.11e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,1.78e-29,1;CL:0002372,1.78e-29,1;CL:0000737,2.11e-08,4;CL:0000515,2.11e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000515;2.11e-08;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!2.54e-88!32;UBERON:0001893!5.26e-83!34;UBERON:0002780!6.30e-81!41;UBERON:0001890!6.30e-81!41;UBERON:0006240!6.30e-81!41;UBERON:0003080!6.29e-79!42;UBERON:0002619!5.87e-78!22;UBERON:0002791!6.35e-78!33;UBERON:0001950!1.90e-76!20;UBERON:0002020!1.45e-75!34;UBERON:0003528!1.45e-75!34;UBERON:0001049!3.48e-72!57;UBERON:0005068!3.48e-72!57;UBERON:0006241!3.48e-72!57;UBERON:0007135!3.48e-72!57;UBERON:0002616!1.34e-69!59;UBERON:0000956!1.59e-68!25;UBERON:0000203!1.59e-68!25;UBERON:0000955!1.77e-67!69;UBERON:0006238!1.77e-67!69;UBERON:0001017!2.93e-60!82;UBERON:0005743!2.91e-57!86;UBERON:0000073!5.40e-55!94;UBERON:0001016!5.40e-55!94;UBERON:0003056!3.46e-53!61;UBERON:0003075!5.82e-50!86;UBERON:0007284!5.82e-50!86;UBERON:0002346!1.60e-47!90;UBERON:0000033!1.20e-38!123;UBERON:0007023!1.11e-36!115;UBERON:0000153!1.31e-36!129;UBERON:0007811!1.31e-36!129;UBERON:0001872!4.64e-29!5;UBERON:0004121!1.82e-28!169;UBERON:0000924!1.10e-27!173;UBERON:0006601!1.10e-27!173;UBERON:0001871!2.35e-25!7;UBERON:0002420!1.34e-22!9;UBERON:0007245!1.34e-22!9;UBERON:0010009!1.34e-22!9;UBERON:0010011!1.34e-22!9;UBERON:0000454!1.34e-22!9;UBERON:0002021!5.85e-19!5;UBERON:0000349!1.17e-18!5;UBERON:0000025!1.41e-17!194;UBERON:0000200!5.79e-16!6;UBERON:0000369!1.17e-13!4;UBERON:0002435!1.17e-13!4;UBERON:0000204!1.17e-13!4;UBERON:0010082!1.17e-13!4;UBERON:0009663!1.83e-13!7;UBERON:0004111!4.56e-13!241;UBERON:0001876!1.71e-12!2;UBERON:0000064!2.01e-12!219;UBERON:0000477!3.58e-11!286;UBERON:0000483!6.15e-11!309;UBERON:0000119!8.92e-11!312;UBERON:0002308!1.68e-10!9;UBERON:0000125!1.68e-10!9;UBERON:0000475!3.45e-10!365;UBERON:0002771!1.10e-08!3;UBERON:0005383!1.24e-08!3;UBERON:0005382!1.24e-08!3;UBERON:0002022!1.65e-07!1;UBERON:0007190!2.10e-07!1;UBERON:0000481!2.47e-07!347;UBERON:0002581!2.67e-07!1;UBERON:0001874!2.84e-07!1;UBERON:0001882!3.20e-07!1;UBERON:0005403!3.20e-07!1;UBERON:0002902!3.40e-07!1;UBERON:0009899!3.40e-07!1;UBERON:0003112!3.60e-07!1;UBERON:0000032!3.60e-07!1;UBERON:0005253!3.60e-07!1;UBERON:0003128!3.60e-07!1;UBERON:0002241!3.60e-07!1;UBERON:0001703!3.60e-07!1;UBERON:0004761!3.60e-07!1;UBERON:0009617!3.60e-07!1 | |ontology_enrichment_uberon=UBERON:0001869!2.54e-88!32;UBERON:0001893!5.26e-83!34;UBERON:0002780!6.30e-81!41;UBERON:0001890!6.30e-81!41;UBERON:0006240!6.30e-81!41;UBERON:0003080!6.29e-79!42;UBERON:0002619!5.87e-78!22;UBERON:0002791!6.35e-78!33;UBERON:0001950!1.90e-76!20;UBERON:0002020!1.45e-75!34;UBERON:0003528!1.45e-75!34;UBERON:0001049!3.48e-72!57;UBERON:0005068!3.48e-72!57;UBERON:0006241!3.48e-72!57;UBERON:0007135!3.48e-72!57;UBERON:0002616!1.34e-69!59;UBERON:0000956!1.59e-68!25;UBERON:0000203!1.59e-68!25;UBERON:0000955!1.77e-67!69;UBERON:0006238!1.77e-67!69;UBERON:0001017!2.93e-60!82;UBERON:0005743!2.91e-57!86;UBERON:0000073!5.40e-55!94;UBERON:0001016!5.40e-55!94;UBERON:0003056!3.46e-53!61;UBERON:0003075!5.82e-50!86;UBERON:0007284!5.82e-50!86;UBERON:0002346!1.60e-47!90;UBERON:0000033!1.20e-38!123;UBERON:0007023!1.11e-36!115;UBERON:0000153!1.31e-36!129;UBERON:0007811!1.31e-36!129;UBERON:0001872!4.64e-29!5;UBERON:0004121!1.82e-28!169;UBERON:0000924!1.10e-27!173;UBERON:0006601!1.10e-27!173;UBERON:0001871!2.35e-25!7;UBERON:0002420!1.34e-22!9;UBERON:0007245!1.34e-22!9;UBERON:0010009!1.34e-22!9;UBERON:0010011!1.34e-22!9;UBERON:0000454!1.34e-22!9;UBERON:0002021!5.85e-19!5;UBERON:0000349!1.17e-18!5;UBERON:0000025!1.41e-17!194;UBERON:0000200!5.79e-16!6;UBERON:0000369!1.17e-13!4;UBERON:0002435!1.17e-13!4;UBERON:0000204!1.17e-13!4;UBERON:0010082!1.17e-13!4;UBERON:0009663!1.83e-13!7;UBERON:0004111!4.56e-13!241;UBERON:0001876!1.71e-12!2;UBERON:0000064!2.01e-12!219;UBERON:0000477!3.58e-11!286;UBERON:0000483!6.15e-11!309;UBERON:0000119!8.92e-11!312;UBERON:0002308!1.68e-10!9;UBERON:0000125!1.68e-10!9;UBERON:0000475!3.45e-10!365;UBERON:0002771!1.10e-08!3;UBERON:0005383!1.24e-08!3;UBERON:0005382!1.24e-08!3;UBERON:0002022!1.65e-07!1;UBERON:0007190!2.10e-07!1;UBERON:0000481!2.47e-07!347;UBERON:0002581!2.67e-07!1;UBERON:0001874!2.84e-07!1;UBERON:0001882!3.20e-07!1;UBERON:0005403!3.20e-07!1;UBERON:0002902!3.40e-07!1;UBERON:0009899!3.40e-07!1;UBERON:0003112!3.60e-07!1;UBERON:0000032!3.60e-07!1;UBERON:0005253!3.60e-07!1;UBERON:0003128!3.60e-07!1;UBERON:0002241!3.60e-07!1;UBERON:0001703!3.60e-07!1;UBERON:0004761!3.60e-07!1;UBERON:0009617!3.60e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002022;1.78e-29;1!UBERON:0007190;1.78e-29;1!UBERON:0001950;5.19e-22;20!UBERON:0002619;3.74e-20;22!UBERON:0001869;1.90e-18;32!UBERON:0001893;2.93e-18;34!UBERON:0000956;6.72e-18;25!UBERON:0000203;6.72e-18;25!UBERON:0002791;1.12e-13;32!UBERON:0002780;3.15e-13;41!UBERON:0001890;3.15e-13;41!UBERON:0003528;9.19e-12;34!UBERON:0002020;9.19e-12;34!UBERON:0001870;8.99e-11;3!UBERON:0000955;3.18e-08;68!UBERON:0000073;3.86e-08;53!UBERON:0002616;3.86e-08;53!UBERON:0001017;6.04e-08;75!UBERON:0007023;4.89e-07;114!UBERON:0001872;5.70e-07;5!UBERON:0002021;5.70e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,1.33e-29,1;UBERON:0007190,4.20e-29,1;UBERON:0001950,5.19e-22,20;UBERON:0001869,1.12e-21,32;UBERON:0001893,1.83e-20,34;UBERON:0002619,3.75e-20,22;UBERON:0000956,6.73e-18,25;UBERON:0000203,6.73e-18,25;UBERON:0002780,3.96e-17,41;UBERON:0001890,3.96e-17,41;UBERON:0003080,3.96e-17,41;UBERON:0006240,3.96e-17,41;UBERON:0000955,8.54e-15,68;UBERON:0006238,8.54e-15,68;UBERON:0002791,3.18e-14,32;UBERON:0003528,1.92e-13,34;UBERON:0002020,1.92e-13,34;UBERON:0000073,2.07e-13,53;UBERON:0002616,2.07e-13,53;UBERON:0001049,1.00e-12,56;UBERON:0005068,1.00e-12,56;UBERON:0006241,1.00e-12,56;UBERON:0007135,1.00e-12,56;UBERON:0001017,1.61e-12,81;UBERON:0003056,1.00e-11,61;UBERON:0001016,2.56e-11,89;UBERON:0001870,7.42e-11,3;UBERON:0007023,3.60e-09,114;UBERON:0003075,7.78e-09,82;UBERON:0007284,7.78e-09,82;UBERON:0002346,1.93e-08,86;UBERON:0010371,4.92e-07,104;UBERON:0002021,6.04e-07,5;UBERON:0001872,6.39e-07,5 | |||
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|short_description=p11@GABRA1 | |short_description=p11@GABRA1 | ||
}} | }} |
Latest revision as of 17:18, 16 September 2015
Short description: | p11@GABRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GABRA1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 46bp_to_ENST00000428797, NM_001127643, uc010jix.2_5end |
EntrezGene: | GABRA1 |
HGNC: | 4075 |
UniProt: | P14867 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 1.78e-29 | 1 |
myotube | 1.78e-29 | 1 |
striated muscle cell | 2.11e-08 | 4 |
skeletal muscle myoblast | 2.11e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
insula | 1.33e-29 | 1 |
paracentral gyrus | 4.20e-29 | 1 |
neocortex | 5.19e-22 | 20 |
cerebral hemisphere | 1.12e-21 | 32 |
telencephalon | 1.83e-20 | 34 |
regional part of cerebral cortex | 3.75e-20 | 22 |
cerebral cortex | 6.73e-18 | 25 |
pallium | 6.73e-18 | 25 |
regional part of forebrain | 3.96e-17 | 41 |
forebrain | 3.96e-17 | 41 |
anterior neural tube | 3.96e-17 | 41 |
future forebrain | 3.96e-17 | 41 |
brain | 8.54e-15 | 68 |
future brain | 8.54e-15 | 68 |
regional part of telencephalon | 3.18e-14 | 32 |
brain grey matter | 1.92e-13 | 34 |
gray matter | 1.92e-13 | 34 |
regional part of nervous system | 2.07e-13 | 53 |
regional part of brain | 2.07e-13 | 53 |
neural tube | 1.00e-12 | 56 |
neural rod | 1.00e-12 | 56 |
future spinal cord | 1.00e-12 | 56 |
neural keel | 1.00e-12 | 56 |
central nervous system | 1.61e-12 | 81 |
pre-chordal neural plate | 1.00e-11 | 61 |
nervous system | 2.56e-11 | 89 |
frontal cortex | 7.42e-11 | 3 |
adult organism | 3.60e-09 | 114 |
neural plate | 7.78e-09 | 82 |
presumptive neural plate | 7.78e-09 | 82 |
neurectoderm | 1.93e-08 | 86 |
ecto-epithelium | 4.92e-07 | 104 |
occipital lobe | 6.04e-07 | 5 |
parietal lobe | 6.39e-07 | 5 |