FFCP PHASE1:Hg19::chr1:24018278..24018303,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:24018278..24018303,+
|short_description=p1@RPL11
|description=CAGE_peak_1_at_RPL11_5end
|association_with_transcript=0bp_to_uc001bhk.2,uc001bhl.2_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6135 | |EntrezGene=6135 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10301 | |HGNC=10301 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001bhk.2,uc001bhl.2_5end | |||
|cluster_id=chr1:24018278..24018303,+ | |||
|coexpression_cluster_id=C3953 | |||
|description=CAGE_peak_1_at_RPL11_5end | |||
|id=chr1:24018278..24018303,+ | |||
|ontology_enrichment_celltype=CL:0002032!1.47e-18!165;CL:0000837!1.47e-18!165;CL:0000037!3.89e-18!172;CL:0000566!3.89e-18!172;CL:0000034!5.87e-16!444;CL:0002057!6.94e-16!42;CL:0000988!8.99e-16!182;CL:0000003!1.15e-15!722;CL:0002031!2.45e-15!124;CL:0000134!5.88e-15!358;CL:0002320!7.82e-15!365;CL:0002087!1.81e-14!119;CL:0000048!2.21e-14!430;CL:0000723!5.87e-14!436;CL:0000860!6.07e-14!45;CL:0000012!7.06e-14!682;CL:0000548!7.21e-13!679;CL:0000004!7.21e-13!679;CL:0000255!7.21e-13!679;CL:0000219!2.22e-12!390;CL:0000063!3.36e-12!578;CL:0000144!7.78e-12!625;CL:0000763!1.80e-11!112;CL:0000049!1.80e-11!112;CL:0000738!2.68e-11!140;CL:0002009!6.48e-09!65;CL:0002371!1.45e-08!591;CL:0002194!2.78e-08!63;CL:0000576!2.78e-08!63;CL:0000040!2.78e-08!63;CL:0000559!2.78e-08!63;CL:0000839!5.28e-08!70;CL:0000557!1.71e-07!71;CL:0000838!1.82e-07!52;CL:0000542!2.47e-07!53;CL:0000051!2.47e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.66e-13;33!CL:0002057;4.66e-13;33!CL:0000473;3.36e-09;39!CL:0000234;3.36e-09;39!CL:0000576;2.83e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,1.84e-19,161;CL:0000837,1.84e-19,161;CL:0000037,5.37e-19,168;CL:0000034,1.02e-16,441;CL:0000988,1.22e-16,177;CL:0002031,2.62e-16,120;CL:0000860,6.94e-16,42;CL:0002057,6.94e-16,42;CL:0000134,1.55e-15,354;CL:0002087,1.99e-15,115;CL:0002320,2.10e-15,361;CL:0000048,4.16e-15,427;CL:0000723,1.15e-14,433;CL:0000473,5.15e-14,48;CL:0000234,5.15e-14,48;CL:0000219,7.10e-13,386;CL:0000763,2.62e-12,108;CL:0000049,2.62e-12,108;CL:0000738,5.29e-12,136;CL:0002009,6.01e-10,61;CL:0002194,2.81e-09,59;CL:0000576,2.81e-09,59;CL:0000040,2.81e-09,59;CL:0000559,2.81e-09,59;CL:0000839,6.78e-09,66;CL:0000557,2.49e-08,67;CL:0000838,1.82e-07,52;CL:0000542,2.47e-07,53;CL:0000051,2.47e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.37e-11;42 | |||
|ontology_enrichment_disease=DOID:8692!2.13e-07!31;DOID:2531!2.23e-07!51;DOID:0060083!2.23e-07!51;DOID:1240!9.21e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.87e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.13e-07,31;DOID:2531,2.23e-07,51;DOID:0060083,2.23e-07,51;DOID:1240,9.21e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002384!3.06e-15!375;UBERON:0002371!3.47e-07!80;UBERON:0001474!4.70e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.20e-16,371;UBERON:0004765,2.13e-08,90;UBERON:0002371,6.34e-08,76;UBERON:0001474,9.59e-08,82;UBERON:0001434,2.01e-07,100 | |||
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03,171.283998345963,880.922216849284 | ||
|short_description=p1@RPL11 | |||
}} | }} |
Latest revision as of 16:39, 16 September 2015
Short description: | p1@RPL11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPL11_5end |
Coexpression cluster: | C3953_Smooth_CD4_Hair_acute_iPS_xeroderma_Nucleus |
Association with transcript: | 0bp_to_uc001bhk.2, uc001bhl.2_5end |
EntrezGene: | RPL11 |
HGNC: | 10301 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 1.84e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-19 | 161 |
hematopoietic stem cell | 5.37e-19 | 168 |
stem cell | 1.02e-16 | 441 |
hematopoietic cell | 1.22e-16 | 177 |
hematopoietic lineage restricted progenitor cell | 2.62e-16 | 120 |
classical monocyte | 6.94e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.94e-16 | 42 |
mesenchymal cell | 1.55e-15 | 354 |
nongranular leukocyte | 1.99e-15 | 115 |
connective tissue cell | 2.10e-15 | 361 |
multi fate stem cell | 4.16e-15 | 427 |
somatic stem cell | 1.15e-14 | 433 |
defensive cell | 5.15e-14 | 48 |
phagocyte | 5.15e-14 | 48 |
motile cell | 7.10e-13 | 386 |
myeloid cell | 2.62e-12 | 108 |
common myeloid progenitor | 2.62e-12 | 108 |
leukocyte | 5.29e-12 | 136 |
macrophage dendritic cell progenitor | 6.01e-10 | 61 |
monopoietic cell | 2.81e-09 | 59 |
monocyte | 2.81e-09 | 59 |
monoblast | 2.81e-09 | 59 |
promonocyte | 2.81e-09 | 59 |
myeloid lineage restricted progenitor cell | 6.78e-09 | 66 |
granulocyte monocyte progenitor cell | 2.49e-08 | 67 |
lymphoid lineage restricted progenitor cell | 1.82e-07 | 52 |
lymphocyte | 2.47e-07 | 53 |
common lymphoid progenitor | 2.47e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.20e-16 | 371 |
skeletal element | 2.13e-08 | 90 |
bone marrow | 6.34e-08 | 76 |
bone element | 9.59e-08 | 82 |
skeletal system | 2.01e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.13e-07 | 31 |
hematologic cancer | 2.23e-07 | 51 |
immune system cancer | 2.23e-07 | 51 |
leukemia | 9.21e-07 | 39 |