FFCP PHASE1:Hg19::chr12:11802932..11802949,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:11802932..11802949,+
|short_description=p3@ETV6
|description=CAGE_peak_3_at_ETV6_5end
|association_with_transcript=0bp_to_ENST00000544715_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2120 | |EntrezGene=2120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3495 | |HGNC=3495 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000544715_5end | |||
|cluster_id=chr12:11802932..11802949,+ | |||
|coexpression_cluster_id=C2187 | |||
|description=CAGE_peak_3_at_ETV6_5end | |||
|id=chr12:11802932..11802949,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.40e-30!76;CL:0000763!1.40e-29!112;CL:0000049!1.40e-29!112;CL:0000557!2.37e-27!71;CL:0000839!2.35e-25!70;CL:0002009!5.09e-24!65;CL:0002194!1.07e-23!63;CL:0000576!1.07e-23!63;CL:0000040!1.07e-23!63;CL:0000559!1.07e-23!63;CL:0002057!1.41e-20!42;CL:0000988!1.69e-18!182;CL:0000860!8.22e-18!45;CL:0000037!2.36e-17!172;CL:0000566!2.36e-17!172;CL:0000738!4.82e-16!140;CL:0002032!1.19e-15!165;CL:0000837!1.19e-15!165;CL:0002031!1.26e-10!124;CL:0002087!1.64e-09!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.81e-26;33!CL:0002057;2.81e-26;33!CL:0000473;2.75e-24;39!CL:0000234;2.75e-24;39!CL:0000576;9.49e-19;48!CL:0000766;2.05e-17;69!CL:0000763;8.76e-12;100!CL:0000451;1.91e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.42e-42,72;CL:0000763,2.10e-38,108;CL:0000049,2.10e-38,108;CL:0000557,7.91e-38,67;CL:0000839,2.96e-35,66;CL:0002194,1.71e-33,59;CL:0000576,1.71e-33,59;CL:0000040,1.71e-33,59;CL:0000559,1.71e-33,59;CL:0002009,2.86e-33,61;CL:0000473,1.32e-30,48;CL:0000234,1.32e-30,48;CL:0000860,2.39e-27,42;CL:0002057,2.39e-27,42;CL:0000988,1.85e-22,177;CL:0000037,1.06e-21,168;CL:0000738,3.99e-21,136;CL:0002032,1.56e-19,161;CL:0000837,1.56e-19,161;CL:0002031,6.00e-14,120;CL:0002087,1.30e-12,115;CL:0000451,1.29e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.51e-20;42!CL:0000049;2.19e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.08e-26!112;UBERON:0002390!2.53e-26!102;UBERON:0003061!2.53e-26!102;UBERON:0002371!6.82e-23!80;UBERON:0001474!8.76e-20!86;UBERON:0004765!1.61e-17!101;UBERON:0001434!1.61e-17!101;UBERON:0002405!3.05e-17!115;UBERON:0003081!5.69e-13!216;UBERON:0002204!1.25e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.30e-37,98;UBERON:0003061,7.30e-37,98;UBERON:0002193,7.58e-37,108;UBERON:0002405,5.66e-34,93;UBERON:0002371,1.51e-32,76;UBERON:0001474,6.64e-29,82;UBERON:0004765,1.02e-27,90;UBERON:0001434,2.06e-24,100;UBERON:0003081,6.99e-23,203;UBERON:0002204,1.75e-12,167;UBERON:0000926,3.21e-11,315;UBERON:0004120,3.21e-11,315;UBERON:0006603,3.21e-11,315 | |||
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| ||
|short_description=p3@ETV6 | |||
}} | }} |
Latest revision as of 16:39, 16 September 2015
Short description: | p3@ETV6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ETV6_5end |
Coexpression cluster: | C2187_granulocyte_CD14_migratory_Eosinophils_Neutrophils_CD34_acute |
Association with transcript: | 0bp_to_ENST00000544715_5end |
EntrezGene: | ETV6 |
HGNC: | 3495 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.42e-42 | 72 |
myeloid cell | 2.10e-38 | 108 |
common myeloid progenitor | 2.10e-38 | 108 |
granulocyte monocyte progenitor cell | 7.91e-38 | 67 |
myeloid lineage restricted progenitor cell | 2.96e-35 | 66 |
monopoietic cell | 1.71e-33 | 59 |
monocyte | 1.71e-33 | 59 |
monoblast | 1.71e-33 | 59 |
promonocyte | 1.71e-33 | 59 |
macrophage dendritic cell progenitor | 2.86e-33 | 61 |
defensive cell | 1.32e-30 | 48 |
phagocyte | 1.32e-30 | 48 |
classical monocyte | 2.39e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.39e-27 | 42 |
hematopoietic cell | 1.85e-22 | 177 |
hematopoietic stem cell | 1.06e-21 | 168 |
leukocyte | 3.99e-21 | 136 |
hematopoietic oligopotent progenitor cell | 1.56e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-19 | 161 |
hematopoietic lineage restricted progenitor cell | 6.00e-14 | 120 |
nongranular leukocyte | 1.30e-12 | 115 |
dendritic cell | 1.29e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.30e-37 | 98 |
blood island | 7.30e-37 | 98 |
hemolymphoid system | 7.58e-37 | 108 |
immune system | 5.66e-34 | 93 |
bone marrow | 1.51e-32 | 76 |
bone element | 6.64e-29 | 82 |
skeletal element | 1.02e-27 | 90 |
skeletal system | 2.06e-24 | 100 |
lateral plate mesoderm | 6.99e-23 | 203 |
musculoskeletal system | 1.75e-12 | 167 |
mesoderm | 3.21e-11 | 315 |
mesoderm-derived structure | 3.21e-11 | 315 |
presumptive mesoderm | 3.21e-11 | 315 |