FFCP PHASE1:Hg19::chr1:23886329..23886336,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:23886329..23886336,-
|short_description=p3@ID3
|description=CAGE_peak_3_at_ID3_5end
|association_with_transcript=-7bp_to_uc001bhh.3_5end
|EntrezGene=3399
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3399 | |EntrezGene=3399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5362 | |HGNC=5362 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_uc001bhh.3_5end | |||
|cluster_id=chr1:23886329..23886336,- | |||
|description=CAGE_peak_3_at_ID3_5end | |||
|id=chr1:23886329..23886336,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002579;7.59e-20;3!CL:0002617;8.01e-14;2!CL:0002586;7.28e-10;3!CL:0002615;7.78e-10;3!CL:0002334;9.62e-09;12!CL:0000136;3.21e-08;13!CL:0000149;1.33e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002579,1.41e-19,3;CL:0002617,6.20e-14,2;CL:0002615,5.74e-10,3;CL:0002586,7.81e-10,3;CL:0002334,1.29e-08,12;CL:0000047,1.07e-07,8;CL:0000149,1.40e-07,4;CL:0000136,3.27e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006222;9.38e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.52e-13!90;UBERON:0003075!8.45e-13!86;UBERON:0007284!8.45e-13!86;UBERON:0005743!1.03e-12!86;UBERON:0000073!7.84e-12!94;UBERON:0001016!7.84e-12!94;UBERON:0003056!2.63e-10!61;UBERON:0001017!3.38e-10!82;UBERON:0007023!1.45e-09!115;UBERON:0000063!2.31e-09!97;UBERON:0003688!1.10e-08!6;UBERON:0002358!1.10e-08!6;UBERON:0003684!1.10e-08!6;UBERON:0001178!1.10e-08!6;UBERON:0001049!1.45e-08!57;UBERON:0005068!1.45e-08!57;UBERON:0006241!1.45e-08!57;UBERON:0007135!1.45e-08!57;UBERON:0000955!5.96e-08!69;UBERON:0006238!5.96e-08!69;UBERON:0002780!2.36e-07!41;UBERON:0001890!2.36e-07!41;UBERON:0006240!2.36e-07!41;UBERON:0000064!2.54e-07!219;UBERON:0002616!4.03e-07!59;UBERON:0003080!4.82e-07!42;UBERON:0001893!7.91e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;5.97e-27;6!UBERON:0002358;5.97e-27;6!UBERON:0003684;5.97e-27;6!UBERON:0001178;5.97e-27;6!UBERON:0004457;6.24e-18;9!UBERON:0000042;6.24e-18;9!UBERON:0000966;1.90e-12;5!UBERON:0005388;1.90e-12;5!UBERON:0001802;1.90e-12;5!UBERON:0001781;7.28e-10;3!UBERON:0001782;7.28e-10;3!UBERON:0000996;2.98e-08;1!UBERON:0002336;3.66e-08;1!UBERON:0011215;3.66e-08;1!UBERON:0001018;3.66e-08;1!UBERON:0002473;3.66e-08;1!UBERON:0005340;3.66e-08;1!UBERON:0003544;3.66e-08;1!UBERON:0005970;3.66e-08;1!UBERON:0002316;3.66e-08;1!UBERON:0001020;3.66e-08;1!UBERON:0002437;3.66e-08;1!UBERON:0003112;9.38e-08;1!UBERON:0011158;9.38e-08;1!UBERON:0003128;9.38e-08;1!UBERON:0001703;9.38e-08;1!UBERON:0002241;9.38e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.91e-27,6;UBERON:0002358,6.91e-27,6;UBERON:0003684,6.91e-27,6;UBERON:0001178,6.91e-27,6;UBERON:0004457,2.24e-13,12;UBERON:0000042,2.24e-13,12;UBERON:0000966,1.40e-10,6;UBERON:0005388,1.40e-10,6;UBERON:0001802,1.40e-10,6;UBERON:0001782,7.81e-10,3;UBERON:0005424,7.81e-10,3;UBERON:0000996,2.89e-08,1;UBERON:0002336,4.07e-08,1;UBERON:0011215,4.07e-08,1;UBERON:0001018,4.07e-08,1;UBERON:0002473,4.07e-08,1;UBERON:0005340,4.07e-08,1;UBERON:0003544,4.07e-08,1;UBERON:0005970,4.07e-08,1;UBERON:0002316,4.07e-08,1;UBERON:0001020,4.07e-08,1;UBERON:0002437,4.07e-08,1;UBERON:0003112,4.99e-08,1;UBERON:0011158,4.99e-08,1;UBERON:0003128,4.99e-08,1;UBERON:0001703,4.99e-08,1;UBERON:0002241,4.99e-08,1;UBERON:0004761,4.99e-08,1;UBERON:0009617,4.99e-08,1;UBERON:0001781,1.40e-07,4 | |||
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| ||
|short_description=p3@ID3 | |||
}} | }} |
Latest revision as of 16:13, 16 September 2015
Short description: | p3@ID3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ID3_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_uc001bhh.3_5end |
EntrezGene: | ID3 |
HGNC: | 5362 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
omentum preadipocyte | 1.41e-19 | 3 |
adipocyte of breast | 6.20e-14 | 2 |
adipocyte of omentum tissue | 5.74e-10 | 3 |
retinal pigment epithelial cell | 7.81e-10 | 3 |
preadipocyte | 1.29e-08 | 12 |
neuronal stem cell | 1.07e-07 | 8 |
visual pigment cell | 1.40e-07 | 4 |
fat cell | 3.27e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.91e-27 | 6 |
peritoneum | 6.91e-27 | 6 |
abdominal cavity | 6.91e-27 | 6 |
visceral peritoneum | 6.91e-27 | 6 |
cavity lining | 2.24e-13 | 12 |
serous membrane | 2.24e-13 | 12 |
retina | 1.40e-10 | 6 |
photoreceptor array | 1.40e-10 | 6 |
posterior segment of eyeball | 1.40e-10 | 6 |
pigmented layer of retina | 7.81e-10 | 3 |
presumptive retinal pigmented epithelium | 7.81e-10 | 3 |
vagina | 2.89e-08 | 1 |
corpus callosum | 4.07e-08 | 1 |
central nervous system cell part cluster | 4.07e-08 | 1 |
axon tract | 4.07e-08 | 1 |
intercerebral commissure | 4.07e-08 | 1 |
dorsal telencephalic commissure | 4.07e-08 | 1 |
brain white matter | 4.07e-08 | 1 |
brain commissure | 4.07e-08 | 1 |
white matter | 4.07e-08 | 1 |
nervous system commissure | 4.07e-08 | 1 |
cerebral hemisphere white matter | 4.07e-08 | 1 |
olfactory region | 4.99e-08 | 1 |
primary subdivision of skull | 4.99e-08 | 1 |
cranium | 4.99e-08 | 1 |
neurocranium | 4.99e-08 | 1 |
chondrocranium | 4.99e-08 | 1 |
cartilaginous neurocranium | 4.99e-08 | 1 |
head paraxial mesoderm | 4.99e-08 | 1 |
layer of retina | 1.40e-07 | 4 |