FFCP PHASE1:Hg19::chr8:134309488..134309503,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10397 | |EntrezGene=10397 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7679 | |HGNC=7679 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDL6,E5RJ98,E5RJY1,E5RG99,E5RI76,B7Z446,E5RGG6,B7Z505,B3KR80 | |UniProt=E9PDL6,E5RJ98,E5RJY1,E5RG99,E5RI76,B7Z446,E5RGG6,B7Z505,B3KR80 | ||
|association_with_transcript=0bp_to_ENST00000354944,ENST00000517599,ENST00000518010,ENST00000518066,ENST00000518480,ENST00000521544,ENST00000522476,ENST00000523892,ENST00000535532,ENST00000537882_5end | |association_with_transcript=0bp_to_ENST00000354944,ENST00000517599,ENST00000518010,ENST00000518066,ENST00000518480,ENST00000521544,ENST00000522476,ENST00000523892,ENST00000535532,ENST00000537882_5end | ||
|cluster_id=chr8:134309488..134309503,- | |||
|coexpression_cluster_id=C862 | |coexpression_cluster_id=C862 | ||
|description=CAGE_peak_1_at_NDRG1_5end | |description=CAGE_peak_1_at_NDRG1_5end | ||
|id=chr8:134309488..134309503,- | |id=chr8:134309488..134309503,- | ||
|ontology_enrichment_celltype=CL:0002057!5.44e-11!42;CL:0000860!5.39e-10!45 | |ontology_enrichment_celltype=CL:0002057!5.44e-11!42;CL:0000860!5.39e-10!45 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.56e-13;33!CL:0002057;4.56e-13;33!CL:0000473;1.33e-08;39!CL:0000234;1.33e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.44e-11,42;CL:0002057,5.44e-11,42;CL:0000473,7.42e-09,48;CL:0000234,7.42e-09,48 | |||
|ontology_enrichment_development_v019=CL:0002057;1.41e-08;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.32e-21!115;UBERON:0000062!5.99e-10!511;UBERON:0001049!1.39e-09!57;UBERON:0005068!1.39e-09!57;UBERON:0006241!1.39e-09!57;UBERON:0007135!1.39e-09!57;UBERON:0003080!2.05e-08!42;UBERON:0002780!4.41e-08!41;UBERON:0001890!4.41e-08!41;UBERON:0006240!4.41e-08!41;UBERON:0000467!8.62e-08!625;UBERON:0000480!9.84e-08!626;UBERON:0002020!7.37e-07!34;UBERON:0003528!7.37e-07!34 | |ontology_enrichment_uberon=UBERON:0007023!8.32e-21!115;UBERON:0000062!5.99e-10!511;UBERON:0001049!1.39e-09!57;UBERON:0005068!1.39e-09!57;UBERON:0006241!1.39e-09!57;UBERON:0007135!1.39e-09!57;UBERON:0003080!2.05e-08!42;UBERON:0002780!4.41e-08!41;UBERON:0001890!4.41e-08!41;UBERON:0006240!4.41e-08!41;UBERON:0000467!8.62e-08!625;UBERON:0000480!9.84e-08!626;UBERON:0002020!7.37e-07!34;UBERON:0003528!7.37e-07!34 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.86e-20,114;UBERON:0001049,2.94e-09,56;UBERON:0005068,2.94e-09,56;UBERON:0006241,2.94e-09,56;UBERON:0007135,2.94e-09,56;UBERON:0000073,3.51e-08,53;UBERON:0002616,3.51e-08,53;UBERON:0002780,4.41e-08,41;UBERON:0001890,4.41e-08,41;UBERON:0003080,4.41e-08,41;UBERON:0006240,4.41e-08,41;UBERON:0010371,1.94e-07,104;UBERON:0002050,6.06e-07,564;UBERON:0003528,7.37e-07,34;UBERON:0002020,7.37e-07,34 | |||
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| ||
|short_description=p1@NDRG1 | |short_description=p1@NDRG1 | ||
}} | }} |
Latest revision as of 16:10, 16 September 2015
Short description: | p1@NDRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NDRG1_5end |
Coexpression cluster: | C862_renal_Urothelial_Small_Esophageal_colon_Prostate_amniotic |
Association with transcript: | 0bp_to_ENST00000354944, ENST00000517599, ENST00000518010, ENST00000518066, ENST00000518480, ENST00000521544, ENST00000522476, ENST00000523892, ENST00000535532, ENST00000537882_5end |
EntrezGene: | NDRG1 |
HGNC: | 7679 |
UniProt: | E9PDL6E5RJ98E5RJY1E5RG99E5RI76B7Z446E5RGG6B7Z505B3KR80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.44e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.44e-11 | 42 |
defensive cell | 7.42e-09 | 48 |
phagocyte | 7.42e-09 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.86e-20 | 114 |
neural tube | 2.94e-09 | 56 |
neural rod | 2.94e-09 | 56 |
future spinal cord | 2.94e-09 | 56 |
neural keel | 2.94e-09 | 56 |
regional part of nervous system | 3.51e-08 | 53 |
regional part of brain | 3.51e-08 | 53 |
regional part of forebrain | 4.41e-08 | 41 |
forebrain | 4.41e-08 | 41 |
anterior neural tube | 4.41e-08 | 41 |
future forebrain | 4.41e-08 | 41 |
ecto-epithelium | 1.94e-07 | 104 |
embryonic structure | 6.06e-07 | 564 |
brain grey matter | 7.37e-07 | 34 |
gray matter | 7.37e-07 | 34 |