FFCP PHASE1:Hg19::chr13:114133384..114133388,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=39890 | |HGNC=39890 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=4bp_to_ENST00000365477_5end | |association_with_transcript=4bp_to_ENST00000365477_5end | ||
|cluster_id=chr13:114133384..114133388,- | |||
|coexpression_cluster_id=C1658 | |coexpression_cluster_id=C1658 | ||
|description=CAGE_peak_1_at_RNU1-16P_5end | |description=CAGE_peak_1_at_RNU1-16P_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002549;2.21e-15;2!CL:0002521;7.42e-11;3!CL:0002567;1.04e-10;3!CL:0000307;1.04e-10;3!CL:0000306;2.35e-08;4!CL:0002222;2.35e-08;4!CL:0002224;2.35e-08;4 | |ontology_enrichment_celltype_v019=CL:0002549;2.21e-15;2!CL:0002521;7.42e-11;3!CL:0002567;1.04e-10;3!CL:0000307;1.04e-10;3!CL:0000306;2.35e-08;4!CL:0002222;2.35e-08;4!CL:0002224;2.35e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002549,2.37e-15,2;CL:0002521,7.42e-11,3;CL:0002567,8.99e-11,3;CL:0000068,1.20e-10,3;CL:0000069,1.20e-10,3;CL:0000307,1.20e-10,3;CL:0000377,1.20e-10,3;CL:0000306,2.26e-08,4;CL:0002222,2.26e-08,4;CL:0002224,2.26e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000377;1.04e-10;3 | |ontology_enrichment_development_v019=CL:0000377;1.04e-10;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0005629;2.21e-15;2!UBERON:0005358;2.21e-15;2!UBERON:0001886;2.21e-15;2!UBERON:0004086;2.21e-15;2!UBERON:0005282;2.21e-15;2!UBERON:0005281;2.21e-15;2!UBERON:0002190;7.42e-11;3!UBERON:0010077;2.35e-08;4!UBERON:0005389;2.35e-08;4!UBERON:0000484;2.35e-08;4!UBERON:0000965;2.35e-08;4!UBERON:0001803;2.35e-08;4!UBERON:0002072;5.08e-07;5!UBERON:0005284;6.21e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0005629;2.21e-15;2!UBERON:0005358;2.21e-15;2!UBERON:0001886;2.21e-15;2!UBERON:0004086;2.21e-15;2!UBERON:0005282;2.21e-15;2!UBERON:0005281;2.21e-15;2!UBERON:0002190;7.42e-11;3!UBERON:0010077;2.35e-08;4!UBERON:0005389;2.35e-08;4!UBERON:0000484;2.35e-08;4!UBERON:0000965;2.35e-08;4!UBERON:0001803;2.35e-08;4!UBERON:0002072;5.08e-07;5!UBERON:0005284;6.21e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,2.37e-15,2;UBERON:0005358,2.37e-15,2;UBERON:0001886,2.37e-15,2;UBERON:0004086,2.37e-15,2;UBERON:0005282,2.37e-15,2;UBERON:0005281,2.37e-15,2;UBERON:0002190,7.42e-11,3;UBERON:0010077,2.26e-08,4;UBERON:0005389,2.26e-08,4;UBERON:0000484,2.26e-08,4;UBERON:0002546,2.26e-08,4;UBERON:0000965,2.26e-08,4;UBERON:0001803,2.26e-08,4;UBERON:0003073,2.26e-08,4;UBERON:0005426,2.26e-08,4;UBERON:0002072,5.08e-07,5;UBERON:0005284,6.39e-07,5 | |||
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| ||
|short_description=p1@RNU1-16P | |short_description=p1@RNU1-16P | ||
}} | }} |
Latest revision as of 16:09, 16 September 2015
Short description: | p1@RNU1-16P |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNU1-16P_5end |
Coexpression cluster: | C1658_Osteoblast_Adipocyte_immature_MCF7_blood_Neurons_Neutrophils |
Association with transcript: | 4bp_to_ENST00000365477_5end |
EntrezGene: | NA |
HGNC: | 39890 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 2.37e-15 | 2 |
subcutaneous fat cell | 7.42e-11 | 3 |
light melanocyte | 8.99e-11 | 3 |
duct epithelial cell | 1.20e-10 | 3 |
branched duct epithelial cell | 1.20e-10 | 3 |
tracheal epithelial cell | 1.20e-10 | 3 |
tracheoblast | 1.20e-10 | 3 |
crystallin accumulating cell | 2.26e-08 | 4 |
vertebrate lens cell | 2.26e-08 | 4 |
lens epithelial cell | 2.26e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 2.37e-15 | 2 |
ventricle of nervous system | 2.37e-15 | 2 |
choroid plexus | 2.37e-15 | 2 |
brain ventricle | 2.37e-15 | 2 |
ventricular system of brain | 2.37e-15 | 2 |
ventricular system of central nervous system | 2.37e-15 | 2 |
subcutaneous adipose tissue | 7.42e-11 | 3 |
cuboidal epithelium | 2.26e-08 | 4 |
transparent eye structure | 2.26e-08 | 4 |
simple cuboidal epithelium | 2.26e-08 | 4 |
cranial placode | 2.26e-08 | 4 |
lens of camera-type eye | 2.26e-08 | 4 |
epithelium of lens | 2.26e-08 | 4 |
lens placode | 2.26e-08 | 4 |
lens vesicle | 2.26e-08 | 4 |
hypodermis | 5.08e-07 | 5 |
brain vasculature | 6.39e-07 | 5 |