FFCP PHASE1:Hg19::chr8:134250145..134250165,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10397 | |EntrezGene=10397 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7679 | |HGNC=7679 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-128bp_to_AK130985_5end | |association_with_transcript=-128bp_to_AK130985_5end | ||
|cluster_id=chr8:134250145..134250165,- | |||
|coexpression_cluster_id=C356 | |coexpression_cluster_id=C356 | ||
|description=CAGE_peak_13_at_NDRG1_5end | |description=CAGE_peak_13_at_NDRG1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000244;5.93e-15;4!CL:0000731;5.93e-15;4!CL:0002541;7.99e-10;3!CL:0000511;1.43e-07;1!CL:0002625;1.43e-07;1!CL:0002252;1.43e-07;1!CL:0000216;1.43e-07;1 | |ontology_enrichment_celltype_v019=CL:0000244;5.93e-15;4!CL:0000731;5.93e-15;4!CL:0002541;7.99e-10;3!CL:0000511;1.43e-07;1!CL:0002625;1.43e-07;1!CL:0002252;1.43e-07;1!CL:0000216;1.43e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000244,3.99e-15,4;CL:0000731,3.99e-15,4;CL:0002541,8.38e-10,3;CL:0002252,7.26e-08,1;CL:0000511,8.84e-08,1;CL:0002625,8.84e-08,1;CL:0000216,8.84e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.75e-08;1!UBERON:0004874;1.43e-07;1 | |ontology_enrichment_development_v019=UBERON:0005425;5.75e-08;1!UBERON:0004874;1.43e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.43e-07;1!DOID:3149;1.43e-07;1 | |ontology_enrichment_disease_v019=DOID:3151;1.43e-07;1!DOID:3149;1.43e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,2.98e-07,1;DOID:3149,2.98e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.55e-12;5!UBERON:0005910;3.87e-10;6!UBERON:0003124;7.99e-10;3!UBERON:0000920;7.99e-10;3!UBERON:0000941;5.75e-08;1!UBERON:0001785;5.75e-08;1!UBERON:0002464;5.75e-08;1!UBERON:0004904;5.75e-08;1!UBERON:0001021;5.75e-08;1!UBERON:0000989;1.43e-07;1!UBERON:0001136;1.43e-07;1!UBERON:0001343;1.43e-07;1!UBERON:0008811;1.43e-07;1!UBERON:0004910;1.43e-07;1!UBERON:0004813;1.43e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000365;4.55e-12;5!UBERON:0005910;3.87e-10;6!UBERON:0003124;7.99e-10;3!UBERON:0000920;7.99e-10;3!UBERON:0000941;5.75e-08;1!UBERON:0001785;5.75e-08;1!UBERON:0002464;5.75e-08;1!UBERON:0004904;5.75e-08;1!UBERON:0001021;5.75e-08;1!UBERON:0000989;1.43e-07;1!UBERON:0001136;1.43e-07;1!UBERON:0001343;1.43e-07;1!UBERON:0008811;1.43e-07;1!UBERON:0004910;1.43e-07;1!UBERON:0004813;1.43e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.32e-12,5;UBERON:0005910,2.98e-10,6;UBERON:0000920,8.38e-10,3;UBERON:0000941,5.58e-08,1;UBERON:0001785,5.58e-08,1;UBERON:0002464,5.58e-08,1;UBERON:0004904,5.58e-08,1;UBERON:0001021,5.58e-08,1;UBERON:0003902,5.58e-08,1;UBERON:0005425,5.58e-08,1;UBERON:0001136,8.84e-08,1;UBERON:0001343,8.84e-08,1;UBERON:0004910,8.84e-08,1;UBERON:0005154,8.84e-08,1;UBERON:0005295,8.84e-08,1;UBERON:0004813,8.84e-08,1;UBERON:0005297,8.84e-08,1;UBERON:0005294,8.84e-08,1;UBERON:0010141,8.84e-08,1;UBERON:0005891,8.84e-08,1;UBERON:0000989,1.15e-07,1;UBERON:0008811,1.15e-07,1;UBERON:0006258,1.15e-07,1;UBERON:0005876,1.15e-07,1;UBERON:0004874,1.15e-07,1 | |||
|phase1_expression=0.726713517082227,0,0.422863212287913,4.00293193412522,0,0.872338524100369,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0.485168122375632,0.464858073811369,0,0,0.863077176966451,0.512321413058201,0.945928919554341,0,1.93645405075148,0,1.12945403725563,0.818718450173537,0,0.306083892370903,0.962787081228281,0.639337125799041,0,0,0.426224750532694,1.16083695451434,0.56738522469114,0,1.00499466102697,1.5644487552606,0.217188844705117,0.605399502633369,1.10483290796269,0.632924774881769,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0.473447805734733,0,0.557052284425868,0.294605907474837,0,0,0,0.390178042679635,0,0,0,0,0,0,0.226618685395132,0.383220493601921,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,1.5905718941022,0.973269740605272,0,0,0,0,1.45718115317017,0.741568885568859,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,1.74437620857014,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.421352420106746,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0,0,0.184099797284599,0.161646056818812,0,0,0,0.193260853163297,0.545492241181669,0.860413786167011,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0,0,0.269662616320329,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0.141775097242386,0.179117045405697,0.871901815541886,1.15014803749563,0,0,0.207328115540772,0,0,0,0,0,1.71072446022705,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0.841980283299221,0.384417447767103,0.511707249066704,0.321707842287215,0,0,0,0.0821271560138091,0,0,0,0,1.47329582297434,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,0.574265537996172,0,1.6068392984416,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0,1.4875642382488,0.576570202095319,0.638063562472921,1.4162089319777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.673554789078584,0.670302275535787,0,0,1.29151611801369,3.36942951335251,1.7737206141467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0.343505344755765,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0.111443384277478,0,1.43246690842614,0.890894042497916,0,0,0,0.556543525114529,0,0.211125408127993,0,0,0,0,0,0.933118762985422,0,0,0,0.197286811273867,0,0,0,0.278304294485554,0,0,0.0874599999961957,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.278847488557207,0,0.113942055847001,0,0,0.108647371922008,2.55200927785536,0.0915975934018623,3.19820865611181,0,0.470940769185074,0,0,0,0,0,0.158936578980379,1.68798451622422,0.652931232636591,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0.296521128680622,0.247127877893006,0.104421949505455,0.337005664903385,0,0.234264445725339,0,0,0.242780379534093,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0.685946781900644,0.261177619741208,0.52418000472609,0.51595809741485,0,0.146178634172371,0.0821154570532092,0.193978032976839,0,0.677942222341597,0.137041924646751,0,0.126621591911757,0,0,0.213452994739353,0.39961921916426,0.144090417154106,0,0.171594997861965,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0,0,0.429226048136571,0,0,0.360299883542404,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0.136203406111576,0,0,0,0,1.5476039091159,0,1.0063040627978,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.453248366080503,0,1.32506888912221,0.387848869084652,0.39669780522807,0.171086837884329,0,0.106787412567695,0.157204305099666,0,0,0.197611631897944,0,0,0.544017803369474,0,0,0,0,0,0.122026264901963,0.500763722825999,0,0.221858103073705,0,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,1.10961172300523,0,0,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0,0.449803112163605,0,0,0.53168342911599,0,0.150257608997218,0,0,0.363697318405119,0.214821114084977,0.464033759878494,0,0,0.686791410365586,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,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| ||
|short_description=p13@NDRG1 | |short_description=p13@NDRG1 | ||
}} | }} |
Latest revision as of 15:59, 16 September 2015
Short description: | p13@NDRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_NDRG1_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | -128bp_to_AK130985_5end |
EntrezGene: | NDRG1 |
HGNC: | 7679 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 3.99e-15 | 4 |
urothelial cell | 3.99e-15 | 4 |
chorionic membrane mesenchymal stem cell | 8.38e-10 | 3 |
epithelial cell of esophagus | 7.26e-08 | 1 |
androgen binding protein secreting cell | 8.84e-08 | 1 |
seminiferous tubule epithelial cell | 8.84e-08 | 1 |
Sertoli cell | 8.84e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.32e-12 | 5 |
transitional epithelium | 2.98e-10 | 6 |
egg chorion | 8.38e-10 | 3 |
cranial nerve II | 5.58e-08 | 1 |
cranial nerve | 5.58e-08 | 1 |
nerve trunk | 5.58e-08 | 1 |
nerve connecting eye with brain | 5.58e-08 | 1 |
nerve | 5.58e-08 | 1 |
retinal neural layer | 5.58e-08 | 1 |
presumptive neural retina | 5.58e-08 | 1 |
mesothelium | 8.84e-08 | 1 |
seminiferous tubule of testis | 8.84e-08 | 1 |
epithelium of male gonad | 8.84e-08 | 1 |
epithelial cord | 8.84e-08 | 1 |
sex cord | 8.84e-08 | 1 |
seminiferous tubule epithelium | 8.84e-08 | 1 |
testis sex cord | 8.84e-08 | 1 |
genital ridge | 8.84e-08 | 1 |
primitive sex cord of indifferent gonad | 8.84e-08 | 1 |
coelomic epithelium | 8.84e-08 | 1 |
penis | 1.15e-07 | 1 |
intromittent organ | 1.15e-07 | 1 |
lateral plate mesenchyme | 1.15e-07 | 1 |
undifferentiated genital tubercle | 1.15e-07 | 1 |
somatopleure | 1.15e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 2.98e-07 | 1 |
keratoacanthoma | 2.98e-07 | 1 |