FFCP PHASE1:Hg19::chr12:116715340..116715396,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:116715340..116715396,-
|short_description=p2@MED13L
|description=CAGE_peak_2_at_MED13L_5end
|association_with_transcript=-197bp_to_ENST00000281928_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23389 | |EntrezGene=23389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22962 | |HGNC=22962 | ||
|TSSclassifier=strong | |||
|UniProt=Q71F56 | |UniProt=Q71F56 | ||
|association_with_transcript=-197bp_to_ENST00000281928_5end | |||
|cluster_id=chr12:116715340..116715396,- | |||
|coexpression_cluster_id=C612 | |||
|description=CAGE_peak_2_at_MED13L_5end | |||
|id=chr12:116715340..116715396,- | |||
|ontology_enrichment_celltype=CL:0000037!6.95e-38!172;CL:0000566!6.95e-38!172;CL:0002032!6.75e-34!165;CL:0000837!6.75e-34!165;CL:0000988!1.18e-33!182;CL:0000738!8.26e-32!140;CL:0000763!3.15e-27!112;CL:0000049!3.15e-27!112;CL:0002087!5.03e-24!119;CL:0002057!5.52e-24!42;CL:0002031!2.67e-23!124;CL:0000766!5.39e-22!76;CL:0000860!8.11e-20!45;CL:0000557!1.09e-18!71;CL:0002009!1.32e-17!65;CL:0002194!4.48e-17!63;CL:0000576!4.48e-17!63;CL:0000040!4.48e-17!63;CL:0000559!4.48e-17!63;CL:0000839!9.15e-17!70;CL:0000134!7.78e-10!358;CL:0002320!4.82e-09!365;CL:0000219!5.22e-07!390;CL:0000838!6.96e-07!52;CL:0000542!9.41e-07!53;CL:0000051!9.41e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.30e-17;33!CL:0002057;1.30e-17;33!CL:0000576;1.25e-16;48!CL:0000766;2.10e-12;69!CL:0000473;5.23e-12;39!CL:0000234;5.23e-12;39!CL:0000763;1.42e-10;100!CL:0002087;2.08e-09;104!CL:0000738;3.26e-08;136!CL:0000988;7.60e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.46e-41,168;CL:0000988,2.05e-37,177;CL:0002032,2.06e-37,161;CL:0000837,2.06e-37,161;CL:0000738,1.59e-35,136;CL:0000763,1.39e-30,108;CL:0000049,1.39e-30,108;CL:0002087,2.33e-27,115;CL:0002031,1.40e-26,120;CL:0000766,9.60e-26,72;CL:0000860,4.68e-24,42;CL:0002057,4.68e-24,42;CL:0000557,3.34e-22,67;CL:0002009,4.42e-21,61;CL:0002194,1.49e-20,59;CL:0000576,1.49e-20,59;CL:0000040,1.49e-20,59;CL:0000559,1.49e-20,59;CL:0000473,4.63e-20,48;CL:0000234,4.63e-20,48;CL:0000839,4.65e-20,66;CL:0000134,8.85e-11,354;CL:0002320,6.49e-10,361;CL:0000219,7.82e-08,386;CL:0000838,3.31e-07,52;CL:0000542,4.55e-07,53;CL:0000051,4.55e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.25e-17;42!CL:0000049;2.10e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.27e-22!102;UBERON:0003061!2.27e-22!102;UBERON:0002193!1.76e-21!112;UBERON:0002371!9.83e-17!80;UBERON:0001474!2.81e-16!86;UBERON:0002405!1.02e-13!115;UBERON:0007023!1.63e-12!115;UBERON:0004765!1.70e-12!101;UBERON:0001434!1.70e-12!101;UBERON:0002384!2.42e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.89e-25,98;UBERON:0003061,2.89e-25,98;UBERON:0002193,5.23e-24,108;UBERON:0002371,1.22e-19,76;UBERON:0002405,2.41e-19,93;UBERON:0001474,5.34e-19,82;UBERON:0004765,6.86e-15,90;UBERON:0001434,6.45e-14,100;UBERON:0007023,1.85e-12,114;UBERON:0002384,3.18e-10,371;UBERON:0003081,2.76e-07,203 | |||
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| ||
|short_description=p2@MED13L | |||
}} | }} |
Latest revision as of 15:24, 16 September 2015
Short description: | p2@MED13L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MED13L_5end |
Coexpression cluster: | C612_Neutrophils_Eosinophils_granulocyte_CD14_CD4_acute_CD19 |
Association with transcript: | -197bp_to_ENST00000281928_5end |
EntrezGene: | MED13L |
HGNC: | 22962 |
UniProt: | Q71F56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.46e-41 | 168 |
hematopoietic cell | 2.05e-37 | 177 |
hematopoietic oligopotent progenitor cell | 2.06e-37 | 161 |
hematopoietic multipotent progenitor cell | 2.06e-37 | 161 |
leukocyte | 1.59e-35 | 136 |
myeloid cell | 1.39e-30 | 108 |
common myeloid progenitor | 1.39e-30 | 108 |
nongranular leukocyte | 2.33e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 1.40e-26 | 120 |
myeloid leukocyte | 9.60e-26 | 72 |
classical monocyte | 4.68e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.68e-24 | 42 |
granulocyte monocyte progenitor cell | 3.34e-22 | 67 |
macrophage dendritic cell progenitor | 4.42e-21 | 61 |
monopoietic cell | 1.49e-20 | 59 |
monocyte | 1.49e-20 | 59 |
monoblast | 1.49e-20 | 59 |
promonocyte | 1.49e-20 | 59 |
defensive cell | 4.63e-20 | 48 |
phagocyte | 4.63e-20 | 48 |
myeloid lineage restricted progenitor cell | 4.65e-20 | 66 |
mesenchymal cell | 8.85e-11 | 354 |
connective tissue cell | 6.49e-10 | 361 |
motile cell | 7.82e-08 | 386 |
lymphoid lineage restricted progenitor cell | 3.31e-07 | 52 |
lymphocyte | 4.55e-07 | 53 |
common lymphoid progenitor | 4.55e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.89e-25 | 98 |
blood island | 2.89e-25 | 98 |
hemolymphoid system | 5.23e-24 | 108 |
bone marrow | 1.22e-19 | 76 |
immune system | 2.41e-19 | 93 |
bone element | 5.34e-19 | 82 |
skeletal element | 6.86e-15 | 90 |
skeletal system | 6.45e-14 | 100 |
adult organism | 1.85e-12 | 114 |
connective tissue | 3.18e-10 | 371 |
lateral plate mesoderm | 2.76e-07 | 203 |